SCOPe 2.04: Domain d2oq7b_: 2oq7 B:

Lineage for d2oq7b_ (2oq7 B:)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
   Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold

5. Family b.82.2.14: Histone demethylase core [254153] (4 proteins)
   Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801

6. Protein JMJD2A core [254342] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [254775] (14 PDB entries)

8. Domain d2oq7b_: 2oq7 B: [243357]
   automated match to d4bisa_
   complexed with ni, oga, zn

Details for d2oq7b_

PDB Entry: 2oq7, 2.15 Å

PDB Description: the crystal structure of jmjd2a complexed with ni and n-oxalylglycine

PDB Compounds: (B:) JmjC domain-containing histone demethylation protein 3A

SCOPe Domain Sequences for d2oq7b_:

Sequence; same for both SEQRES and ATOM records:

>d2oq7b_ b.82.2.14 (B:) JMJD2A core {Human (Homo sapiens) [TaxId: 9606]}
tlnpsarimtfyptmeefrnfsryiayiesqgahraglakvvppkewkprasyddiddlv
ipapiqqlvtgqsglftqyniqkkamtvrefrkiansdkyctprysefeelerkywknlt
fnppiygadvngtlyekhvdewnigrlrtildlvekesgitiegvntpylyfgmwktsfa
whtedmdlysinylhfgepkswysvppehgkrlerlakgffpgsaqsceaflrhkmtlis
plmlkkygipfdkvtqeagefmitfpygyhagfnhgfncaestnfatrrwieygkqavlc
scrkdmvkismdvfvrkfqperyklwkagkdntvidhtlptpeaaef

Timeline for d2oq7b_:

• d2oq7b_ is new in SCOPe 2.04-stable
  
• d2oq7b_ appears in SCOPe 2.05
  
• d2oq7b_ appears in the current release, SCOPe 2.08