SCOPe 2.05: Domain d2nv1d_: 2nv1 D:

Lineage for d2nv1d_ (2nv1 D:)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families)

5. Family c.1.2.6: PdxS-like [141755] (2 proteins)
   Pfam PF01680; SOR/SNZ

6. Protein automated matches [193117] (4 species)
   not a true protein

7. Species Bacillus subtilis [TaxId:1423] [230975] (2 PDB entries)

8. Domain d2nv1d_: 2nv1 D: [243242]
   automated match to d2nv2i_
   complexed with cl, edo, mg

Details for d2nv1d_

PDB Entry: 2nv1, 2.08 Å

PDB Description: Structure of the synthase subunit Pdx1 (YaaD) of PLP synthase from Bacillus subtilis

PDB Compounds: (D:) Pyridoxal biosynthesis lyase pdxS

SCOPe Domain Sequences for d2nv1d_:

Sequence, based on SEQRES records:

>d2nv1d_ c.1.2.6 (D:) automated matches {Bacillus subtilis [TaxId: 1423]}
rvkrgmaemqkggvimdvinaeqakiaeeagavavmalervpadiraaggvarmadptiv
eevmnavsipvmakarighivearvleamgvdyidesevltpadeefhlnkneytvpfvc
gcrdlgeatrriaegasmlrtkgepgtgniveavrhmrkvnaqvrkvvamsedelmteak
nlgapyelllqikkdgklpvvnfaaggvatpadaalmmqlgadgvfvgsgifksdnpakf
akaiveatthftdykliaelskelg

Sequence, based on observed residues (ATOM records):

>d2nv1d_ c.1.2.6 (D:) automated matches {Bacillus subtilis [TaxId: 1423]}
rvkrgmaemqkggvimdvinaeqakiaeeagavavmalergvarmadptiveevmnavsi
pvmakarighivearvleamgvdyidesevltpadeefhlnkneytvpfvcgcrdlgeat
rriaegasmlrtkgepgtgniveavrhmrkvnaqvrkvvamsedelmteaknlgapyell
lqikkdgklpvvnfaaggvatpadaalmmqlgadgvfvgsgifksdnpakfakaiveatt
hftdykliaelskelg

Timeline for d2nv1d_:

• d2nv1d_ first appeared in SCOPe 2.04
  
• d2nv1d_ appears in SCOPe 2.06
  
• d2nv1d_ appears in the current release, SCOPe 2.08