SCOPe 2.06: Domain d2b5ma4: 2b5m A:393-707

Lineage for d2b5ma4 (2b5m A:393-707)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.4: WD40 repeat-like [50978] (4 families)
   also contains 8-bladed propellers

5. Family b.69.4.3: DDB1-like [254176] (1 protein)
   PubMed 16413485; combines Pfam PF10433 and Pfam PF03178. Distant homology to WD40 proposed in PubMed 10982878
   this is a repeat family; one repeat unit is 2b5m A:908-950 found in domain

6. Protein DDB1 [254396] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [254832] (2 PDB entries)

8. Domain d2b5ma4: 2b5m A:393-707 [241272]
   Other proteins in same PDB: d2b5ma3
   protein/DNA complex

Details for d2b5ma4

PDB Entry: 2b5m, 2.92 Å

PDB Description: Crystal Structure of DDB1

PDB Compounds: (A:) damage-specific DNA binding protein 1

SCOPe Domain Sequences for d2b5ma4:

Sequence; same for both SEQRES and ATOM records:

>d2b5ma4 b.69.4.3 (A:393-707) DDB1 {Human (Homo sapiens) [TaxId: 9606]}
gigihehasidlpgikglwplrsdpnretydtlvlsfvgqtrvlmlngeeveetelmgfv
ddqqtffcgnvahqqliqitsasvrlvsqepkalvsewkepqaknisvascnssqvvvav
gralyylqihpqelrqishtemehevaclditplgdsnglsplcaiglwtdisarilklp
sfellhkemlggeiiprsilmttfesshyllcalgdgalfyfglnietgllsdrkkvtlg
tqptvlrtfrslsttnvfacsdrptviyssnhklvfsnvnlkevnymcplnsdgypdsla
lannstltigtidei

Timeline for d2b5ma4:

• d2b5ma4 first appeared in SCOPe 2.04
  
• d2b5ma4 appears in SCOPe 2.05
  
• d2b5ma4 appears in SCOPe 2.07
  
• d2b5ma4 appears in the current release, SCOPe 2.08