SCOPe 2.06: Domain d1yr2a2: 1yr2 A:457-735

Lineage for d1yr2a2 (1yr2 A:457-735)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.69: alpha/beta-Hydrolases [53473] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest

4. Superfamily c.69.1: alpha/beta-Hydrolases [53474] (42 families)
   many members have left-handed crossover connection between strand 8 and additional strand 9

5. Family c.69.1.0: automated matches [191404] (1 protein)
   not a true family

6. Protein automated matches [190543] (91 species)
   not a true protein

7. Species Novosphingobium capsulatum [TaxId:13688] [254989] (1 PDB entry)

8. Domain d1yr2a2: 1yr2 A:457-735 [241062]
   Other proteins in same PDB: d1yr2a1, d1yr2a3
   automated match to d3iula2
   complexed with gol

Details for d1yr2a2

PDB Entry: 1yr2, 1.8 Å

PDB Description: Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity

PDB Compounds: (A:) prolyl oligopeptidase

SCOPe Domain Sequences for d1yr2a2:

Sequence, based on SEQRES records:

>d1yr2a2 c.69.1.0 (A:457-735) automated matches {Novosphingobium capsulatum [TaxId: 13688]}
adfrveqvfypskdgtkvpmfivrrkdakgplptllygyggfnvaltpwfsagfmtwids
ggafalanlrgggeygdawhdagrrdkkqnvfddfiaagewliangvtprhglaieggsn
gglligavtnqrpdlfaaaspavgvmdmlrfdqftagrywvddygypekeadwrvlrrys
pyhnvrsgvdypailvttadtddrvvpghsfkytaalqtaaigpkphlirietraghgsg
kpidkqieetadvqaflahftgltprpwssvdklaaale

Sequence, based on observed residues (ATOM records):

>d1yr2a2 c.69.1.0 (A:457-735) automated matches {Novosphingobium capsulatum [TaxId: 13688]}
adfrveqvfypskdgtkvpmfivrrkdakgplptllygyggfnvaltpwfsagfmtwids
ggafalanlrgggeygdawhdagrrdkkqnvfddfiaagewliangvtprhglaieggsn
gglligavtnqrpdlfaaaspavgvmdmlrfdqftagrywvddygypekeadwrvlrrys
pyhnvrsgvdypailvttadtddrvvpghsfkytaalqtaaigpkphliriepidkqiee
tadvqaflahftgltprpwssvdklaaale

Timeline for d1yr2a2:

• d1yr2a2 first appeared in SCOPe 2.04
  
• d1yr2a2 appears in SCOPe 2.05
  
• d1yr2a2 appears in SCOPe 2.07
  
• d1yr2a2 appears in the current release, SCOPe 2.08