SCOPe 2.06: Domain d1yr2a1: 1yr2 A:38-456

Lineage for d1yr2a1 (1yr2 A:38-456)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
   consists of seven 4-stranded beta-sheet motifs; meander

4. Superfamily b.69.7: Peptidase/esterase 'gauge' domain [50993] (3 families)

5. Family b.69.7.0: automated matches [227149] (1 protein)
   not a true family

6. Protein automated matches [226853] (3 species)
   not a true protein

7. Species Novosphingobium capsulatum [TaxId:13688] [254988] (1 PDB entry)

8. Domain d1yr2a1: 1yr2 A:38-456 [241061]
   Other proteins in same PDB: d1yr2a2, d1yr2a3
   automated match to d3iula1
   complexed with gol

Details for d1yr2a1

PDB Entry: 1yr2, 1.8 Å

PDB Description: Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity

PDB Compounds: (A:) prolyl oligopeptidase

SCOPe Domain Sequences for d1yr2a1:

Sequence, based on SEQRES records:

>d1yr2a1 b.69.7.0 (A:38-456) automated matches {Novosphingobium capsulatum [TaxId: 13688]}
ppypaspqvplvedhfgekvsdpwrwleadvrtdakvaawvqaqsaytaaylkqlperaa
lekrmkalidyerfglpqrrgasvfyswnsglmnqsqllvrpadapvgtkgrvlldpntw
akdgataldawaasddgrllaysvqdggsdwrtvkfvgvadgkpladelkwvkfsglawl
gndallysrfaepkegqafqalnynqtvwlhrlgtpqsadqpvfatpelpkrghgasvss
dgrwvvitssegtdpvntvhvarvtngkigpvtalipdlkaqwdfvdgvgdqlwfvsgdg
aplkkivrvdlsgstprfdtvvpeskdnlesvgiagnrlfasyihdaksqvlafdldgkp
agavslpgigsasglsgrpgdrhaylsfssftqpatvlaldpatakttpwepvhltfdp

Sequence, based on observed residues (ATOM records):

>d1yr2a1 b.69.7.0 (A:38-456) automated matches {Novosphingobium capsulatum [TaxId: 13688]}
ppypaspqvplvedhfgekvsdpwrwleadvrtdakvaawvqaqsaytaaylkqlperaa
lekrmkalidyerfglpqrrgasvfyswnsglmnqsqllvrpadapvgtkgrvlldpntw
ataldawaasddgrllaysvqdggsdwrtvkfvgvadgkpladelkwvkfsglawlgnda
llysrfaeplnynqtvwlhrlgtpqsadqpvfatpelpkrghgasvssdgrwvvitsseg
tdpvntvhvarvtngkigpvtalipdlkaqwdfvdgvgdqlwfvsgdgaplkkivrvdls
gstprfdtvvpeskdnlesvgiagnrlfasyihdaksqvlafdldgkpagavslpgigsa
sglsgrpgdrhaylsfssftqpatvlaldpatakttpwepvhltfdp

Timeline for d1yr2a1:

• d1yr2a1 first appeared in SCOPe 2.04
  
• d1yr2a1 appears in SCOPe 2.05
  
• d1yr2a1 appears in SCOPe 2.07
  
• d1yr2a1 appears in the current release, SCOPe 2.08