SCOPe 2.04: Domain d1yc9a_: 1yc9 A:

Lineage for d1yc9a_ (1yc9 A:)

1. Root: SCOPe 2.04

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.5: Outer membrane efflux proteins (OEP) [56953] (1 superfamily)
   subunit fold contains tandem repeat of alpha-beta hairpin-alpha(2) motif
   trimeric fold contains barrel (n=12, S=18) formed by beta-hairpins, two from each subunit, and a bundle of helices with a channel running through it

4. Superfamily f.5.1: Outer membrane efflux proteins (OEP) [56954] (2 families)

5. Family f.5.1.0: automated matches [227266] (1 protein)
   not a true family

6. Protein automated matches [227059] (3 species)
   not a true protein

7. Species Vibrio cholerae [TaxId:666] [254977] (1 PDB entry)

8. Domain d1yc9a_: 1yc9 A: [241011]
   automated match to d4k7ka_
   complexed with bog, hg

Details for d1yc9a_

PDB Entry: 1yc9, 1.8 Å

PDB Description: the crystal structure of the outer membrane protein vcec from the bacterial pathogen vibrio cholerae at 1.8 resolution

PDB Compounds: (A:) multidrug resistance protein

SCOPe Domain Sequences for d1yc9a_:

Sequence, based on SEQRES records:

>d1yc9a_ f.5.1.0 (A:) automated matches {Vibrio cholerae [TaxId: 666]}
wpsanwwqryqdaqlnhlieealqhspslcmamarlkgaqgfarqagairsfdlglaasa
teskvseryqsatppdgwndygtltlnfqydfdfwgknraavvaatselaaaeaesvaar
lmistsianayaelarlyanqetvhaalqvrnktvellekryangletlgsvsqakavaa
sveaellgiqesiqlqknalaalvgqgpdraasieephitltsryglpseagvgllghra
ditaarwraeaaaqqvgiaqaqfypdvtlsafigyqafgldhlfdsgndagaigpaiylp
lftggrlegqltsaearyqeavaqyngtlvqalheiadvvtssqalqarinkteqavqqa
eqalhiatnryqgglatyldvlvaeesllnnqralvnlqsrafsldlalihalgggfe

Sequence, based on observed residues (ATOM records):

>d1yc9a_ f.5.1.0 (A:) automated matches {Vibrio cholerae [TaxId: 666]}
wpsanwwqryqdaqlnhlieealqhspslcmamarlkgaqgfarqagairsfdlglaasa
teskvseryqsatppdgwndygtltlnfqydfdfwgknraavvaatselaaaeaesvaar
lmistsianayaelarlyanqetvhaalqvrnktvellekryangletlgsvsqakavaa
sveaellgiqesiqlqknalaalvgqgpdraasieephitltsryvgllghraditaarw
raeaaaqqvgiaqaqfypdvtlsafigyqafgldhlfdsgndagaigpaiylplftggrl
egqltsaearyqeavaqyngtlvqalheiadvvtssqalqarinkteqavqqaeqalhia
tnryqgglatyldvlvaeesllnnqralvnlqsrafsldlalihalgggfe

Timeline for d1yc9a_:

• d1yc9a_ is new in SCOPe 2.04-stable
  
• d1yc9a_ appears in SCOPe 2.05
  
• d1yc9a_ appears in the current release, SCOPe 2.08