Lineage for d1y9dd1 (1y9d D:9-182)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108258Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2108259Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2108851Family c.36.1.0: automated matches [227300] (1 protein)
    not a true family
  6. 2108852Protein automated matches [227126] (16 species)
    not a true protein
  7. 2108944Species Lactobacillus plantarum [TaxId:1590] [254973] (6 PDB entries)
  8. 2108971Domain d1y9dd1: 1y9d D:9-182 [240991]
    Other proteins in same PDB: d1y9da2, d1y9db2, d1y9dc2, d1y9dd2
    automated match to d2ez9a2
    complexed with fad, mg, na, so4, tpp

Details for d1y9dd1

PDB Entry: 1y9d (more details), 2.2 Å

PDB Description: Pyruvate Oxidase variant V265A from Lactobacillus plantarum
PDB Compounds: (D:) Pyruvate oxidase

SCOPe Domain Sequences for d1y9dd1:

Sequence, based on SEQRES records: (download)

>d1y9dd1 c.36.1.0 (D:9-182) automated matches {Lactobacillus plantarum [TaxId: 1590]}

Sequence, based on observed residues (ATOM records): (download)

>d1y9dd1 c.36.1.0 (D:9-182) automated matches {Lactobacillus plantarum [TaxId: 1590]}

SCOPe Domain Coordinates for d1y9dd1:

Click to download the PDB-style file with coordinates for d1y9dd1.
(The format of our PDB-style files is described here.)

Timeline for d1y9dd1: