SCOPe 2.05: Domain d1vamd_: 1vam D:

Lineage for d1vamd_ (1vam D:)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.29: Concanavalin A-like lectins/glucanases [49898] (1 superfamily)
   sandwich; 12-14 strands in 2 sheets; complex topology

4. Superfamily b.29.1: Concanavalin A-like lectins/glucanases [49899] (26 families)

5. Family b.29.1.1: Legume lectins [49900] (5 proteins)

6. Protein Concanavalin A [49901] (4 species)
   natural circle permutation: the "old" N- and C-termini are linked with a peptide bond, whereas the "new" ones correspond to a cleaved loop

7. Species Jack bean (Canavalia ensiformis) [TaxId:3823] [49902] (56 PDB entries)
   Uniprot P81461

8. Domain d1vamd_: 1vam D: [24005]
   complexed with ca, mn, pna

Details for d1vamd_

PDB Entry: 1vam, 2.75 Å

PDB Description: concanavalin a complex with 4'-nitrophenyl-alpha-d-mannopyranoside

PDB Compounds: (D:) concanavalin a

SCOPe Domain Sequences for d1vamd_:

Sequence; same for both SEQRES and ATOM records:

>d1vamd_ b.29.1.1 (D:) Concanavalin A {Jack bean (Canavalia ensiformis) [TaxId: 3823]}
adtivaveldtypntdigdpsyphigidiksvrskktakwnmqngkvgtahiiynsvdkr
lsavvsypnadsatvsydvdldnvlpewvrvglsastglyketntilswsftsklksnst
hetnalhfmfnqfskdqkdlilqgdattgtdgnleltrvssngspqgssvgralfyapvh
iwessavvasfeatftflikspdshpadgiaffisnidssipsgstgrllglfpdan

Timeline for d1vamd_:

• d1vamd_ first appeared (with stable ids) in SCOP 1.55
  
• d1vamd_ appears in SCOPe 2.04
  
• d1vamd_ appears in SCOPe 2.06
  
• d1vamd_ appears in the current release, SCOPe 2.08