SCOPe 2.08: Domain d3dbrb1: 3dbr B:12-442

Lineage for d3dbrb1 (3dbr B:12-442)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.111: Activating enzymes of the ubiquitin-like proteins [69571] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest

4. Superfamily c.111.1: Activating enzymes of the ubiquitin-like proteins [69572] (3 families)
   transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins
   the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds

5. Family c.111.1.2: Ubiquitin activating enzymes (UBA) [89763] (3 proteins)
   the common fold is elaborated with additional (sub)domains

6. Protein UBA3 [89764] (1 species)
   a subunit of the heterodimeric E1 enzyme for NEDD8; contains an all-alpha insert subdomain of the FF-like fold (residues 210-288) and an extra C-terminal alpha+beta subdomain (partly disordered)

7. Species Human (Homo sapiens) [TaxId:9606] [89765] (12 PDB entries)
   Uniprot Q8TBC4 33-458

8. Domain d3dbrb1: 3dbr B:12-442 [239202]
   Other proteins in same PDB: d3dbra_, d3dbrb2, d3dbrc_, d3dbrd2, d3dbre_, d3dbrf2, d3dbrg_, d3dbrh2, d3dbri1, d3dbri2, d3dbrj1, d3dbrj2, d3dbrk1, d3dbrk2, d3dbrl1, d3dbrl2
   automated match to d3dbhb_
   complexed with zn
   has additional subdomain(s) that are not in the common domain

Details for d3dbrb1

PDB Entry: 3dbr, 3.05 Å

PDB Description: structural dissection of a gating mechanism preventing misactivation of ubiquitin by nedd8's e1 (appbp1-uba3arg190gln-nedd8ala72arg)

PDB Compounds: (B:) NEDD8-activating enzyme E1 catalytic subunit

SCOPe Domain Sequences for d3dbrb1:

Sequence; same for both SEQRES and ATOM records:

>d3dbrb1 c.111.1.2 (B:12-442) UBA3 {Human (Homo sapiens) [TaxId: 9606]}
dwegrwnhvkkflersgpfthpdfepsteslqflldtckvlvigagglgcellknlalsg
frqihvidmdtidvsnlnrqflfrpkdigrpkaevaaeflndrvpncnvvphfnkiqdfn
dtfyrqfhiivcgldsiiarrwingmlisllnyedgvldpssivplidggtegfkgnaqv
ilpgmtaciectlelyppqvnfpmatiasmprlpehcieyvrmlqwpkeqpfgegvpldg
ddpehiqwifqkslerasqynirgvtyrltqgvvkriipavastnaviaavcatevfkia
tsayiplnnylvfndvdglytytfeaerkencpacsqlpqniqfspsaklqevldyltns
aslqmkspaitatlegknrtlylqsvtsieertrpnlsktlkelglvdgqelavadvttp
qtvlfklhfts

Timeline for d3dbrb1:

• d3dbrb1 first appeared in SCOPe 2.04, called d3dbrb_
  
• d3dbrb1 appears in SCOPe 2.07