Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2698054Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 2698055Superfamily a.22.1: Histone-fold [47113] (5 families) (S)
  5. 2699233Family a.22.1.0: automated matches [238448] (1 protein)
    not a true family
  6. 2699234Protein automated matches [238450] (4 species)
    not a true protein

Species:

  1. 2699235African clawed frog (Xenopus laevis) [TaxId:8355] [385237] (1 PDB entry)
  2. 2699238Human (Homo sapiens) [TaxId:9606] [238452] (8 PDB entries)
    1. Domains for 4nft:
      1. 2699247Domain d4nfta1: 4nft A:2-95 [238458]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa2
      2. 2699248Domain d4nfta2: 4nft A:98-186 [238459]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa1
      3. 2699249Domain d4nftb1: 4nft B:2-95 [238460]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa2
      4. 2699250Domain d4nftb2: 4nft B:98-186 [238461]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa1
      5. 2699251Domain d4nftc1: 4nft C:5-93 [238456]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa2
      6. 2699252Domain d4nftc2: 4nft C:98-186 [238457]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa1
      7. 2699253Domain d4nftd1: 4nft D:5-93 [238454]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa2
      8. 2699254Domain d4nftd2: 4nft D:98-186 [238455]
        Other proteins in same PDB: d4nfta3, d4nftb3
        automated match to d2jssa1
    2. Domain for 5b31:
    3. Domain for 5b32:
    4. Domains for 5b33:
      1. 2699257Domain d5b33c_: 5b33 C: [320292]
        Other proteins in same PDB: d5b33a_, d5b33b_, d5b33d_, d5b33e_, d5b33f_, d5b33h_
        automated match to d1id3c_
        protein/DNA complex
      2. 2699258Domain d5b33g_: 5b33 G: [320320]
        Other proteins in same PDB: d5b33a_, d5b33b_, d5b33d_, d5b33e_, d5b33f_, d5b33h_
        automated match to d1id3c_
        protein/DNA complex
    5. Domains for 5chl:
      1. 2699239Domain d5chlb1: 5chl B:95-95 [414615]
        Other proteins in same PDB: d5chlb3
        automated match to d6w4la1
      2. 2699240Domain d5chlb2: 5chl B:96-179 [414616]
        Other proteins in same PDB: d5chlb3
        automated match to d6w4la2
    6. Domains for 5z30:
      1. 2699245Domain d5z30c_: 5z30 C: [355024]
        Other proteins in same PDB: d5z30b_, d5z30d_, d5z30f_, d5z30h_
        automated match to d1id3c_
        protein/DNA complex; complexed with cl, mn; mutant
      2. 2699246Domain d5z30g_: 5z30 G: [355041]
        Other proteins in same PDB: d5z30b_, d5z30d_, d5z30f_, d5z30h_
        automated match to d1id3c_
        protein/DNA complex; complexed with cl, mn; mutant
    7. Domains for 6a7u:
      1. 2699255Domain d6a7ua1: 6a7u A:36-124 [365242]
        automated match to d4m6ba1
      2. 2699256Domain d6a7ua2: 6a7u A:145-225 [365244]
        automated match to d4m6ba2
    8. Domains for 6jou:
      1. 2699241Domain d6jouc_: 6jou C: [382582]
        Other proteins in same PDB: d6joub_, d6joud_, d6jouf_, d6jouh_
        automated match to d1id3c_
        protein/DNA complex; complexed with mn
      2. 2699242Domain d6joug_: 6jou G: [382622]
        Other proteins in same PDB: d6joub_, d6joud_, d6jouf_, d6jouh_
        automated match to d1id3c_
        protein/DNA complex; complexed with mn
  3. 2699259Nematode (Caenorhabditis elegans) [TaxId:6239] [375480] (4 PDB entries)
    1. Domains for 6k00:
      1. 2699260Domain d6k00d1: 6k00 D:31-122 [375578]
        Other proteins in same PDB: d6k00a_, d6k00b1, d6k00b2
        automated match to d2jssa2
      2. 2699261Domain d6k00d2: 6k00 D:128-215 [375579]
        Other proteins in same PDB: d6k00a_, d6k00b1, d6k00b2
        automated match to d2jssa1
    2. Domains for 6k03:
      1. 2699266Domain d6k03d1: 6k03 D:30-119 [375481]
        automated match to d2jssa2
      2. 2699267Domain d6k03d2: 6k03 D:137-212 [375482]
        automated match to d2jssa1
    3. Domains for 6k09:
      1. 2699262Domain d6k09d1: 6k09 D:30-122 [375554]
        Other proteins in same PDB: d6k09a1, d6k09a2, d6k09b1, d6k09b2
        automated match to d2jssa2
      2. 2699263Domain d6k09d2: 6k09 D:128-215 [375555]
        Other proteins in same PDB: d6k09a1, d6k09a2, d6k09b1, d6k09b2
        automated match to d2jssa1
    4. Domains for 6k0c:
      1. 2699264Domain d6k0cd1: 6k0c D:30-120 [375551]
        Other proteins in same PDB: d6k0ca1, d6k0ca2, d6k0cb1, d6k0cb2, d6k0cd3
        automated match to d4nftc1
      2. 2699265Domain d6k0cd2: 6k0c D:126-212 [375552]
        Other proteins in same PDB: d6k0ca1, d6k0ca2, d6k0cb1, d6k0cb2, d6k0cd3
        automated match to d5fuga_
  4. 2699268Schizosaccharomyces pombe [TaxId:284812] [348606] (2 PDB entries)
    1. Domains for 5y26:
      1. 2699271Domain d5y26a_: 5y26 A: [348727]
        Other proteins in same PDB: d5y26b2
        automated match to d2bykd_
        protein/DNA complex; complexed with gol
      2. 2699272Domain d5y26b1: 5y26 B:1-87 [348607]
        Other proteins in same PDB: d5y26b2
        automated match to d5g49b_
        protein/DNA complex; complexed with gol
    2. Domains for 5y27:
      1. 2699269Domain d5y27a_: 5y27 A: [348624]
        Other proteins in same PDB: d5y27b2
        automated match to d2bykd_
        protein/DNA complex; complexed with gol
      2. 2699270Domain d5y27b1: 5y27 B:1-87 [348740]
        Other proteins in same PDB: d5y27b2
        automated match to d5g49b_
        protein/DNA complex; complexed with gol

More info for Protein automated matches from a.22.1.0: automated matches

Timeline for Protein automated matches from a.22.1.0: automated matches: