SCOPe 2.06: Domain d4mlqa1: 4mlq A:1-218

Lineage for d4mlqa1 (4mlq A:1-218)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (140 species)
   not a true protein

7. Species Bacillus megaterium [TaxId:1404] [238213] (5 PDB entries)

8. Domain d4mlqa1: 4mlq A:1-218 [238214]
   Other proteins in same PDB: d4mlqa2, d4mlqa3
   automated match to d1pdaa1
   complexed with 29p, acy, dpm

Details for d4mlqa1

PDB Entry: 4mlq, 1.6 Å

PDB Description: Crystal structure of Bacillus megaterium porphobilinogen deaminase

PDB Compounds: (A:) porphobilinogen deaminase

SCOPe Domain Sequences for d4mlqa1:

Sequence, based on SEQRES records:

>d4mlqa1 c.94.1.0 (A:1-218) automated matches {Bacillus megaterium [TaxId: 1404]}
mrkiivgsrrsklaltqtkwvieqlkkqglpfefeikemvtkgdqilnvtlskvggkglf
vkeieqamldkeidmavhsmkdmpavlpegltigciplredhrdaliskngerfeelpsg
avigtsslrrgaqllsmrsdieikwirgnidtrleklknedydaiilaaaglsrmgwskd
tvtqylepeisvpavgqgalaiecrendhellsllqal

Sequence, based on observed residues (ATOM records):

>d4mlqa1 c.94.1.0 (A:1-218) automated matches {Bacillus megaterium [TaxId: 1404]}
mrkiivgsrrsklaltqtkwvieqlkkqglpfefeikemvkeieqamldkeidmavhsmk
dmpavlpegltigciplredhrdaliskngerfeelpsgavigtsslrrgaqllsmrsdi
eikwirgnidtrleklknedydaiilaaaglsrmgwskdtvtqylepeisvpavgqgala
iecrendhellsllqal

Timeline for d4mlqa1:

• d4mlqa1 first appeared in SCOPe 2.03
  
• d4mlqa1 appears in SCOPe 2.05
  
• d4mlqa1 appears in SCOPe 2.07
  
• d4mlqa1 appears in the current release, SCOPe 2.08