SCOPe 2.04: Domain d4lmdb_: 4lmd B:

Lineage for d4lmdb_ (4lmd B:)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.89: Origin of replication-binding domain, RBD-like [55463] (1 superfamily)
   alpha-beta-alpha-beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel sheet 41325

4. Superfamily d.89.1: Origin of replication-binding domain, RBD-like [55464] (6 families)

5. Family d.89.1.1: The origin DNA-binding domain of SV40 T-antigen [55465] (2 proteins)

6. Protein The origin DNA-binding domain of SV40 T-antigen [55466] (2 species)

7. Species Jc polyomavirus [TaxId:10632] [237285] (3 PDB entries)

8. Domain d4lmdb_: 4lmd B: [238170]
   automated match to d4lifa_
   complexed with flc, gol

Details for d4lmdb_

PDB Entry: 4lmd, 1.5 Å

PDB Description: Crystal structure of the JCV large t-antigen origin binding domain

PDB Compounds: (B:) large t antigen

SCOPe Domain Sequences for d4lmdb_:

Sequence; same for both SEQRES and ATOM records:

>d4lmdb_ d.89.1.1 (B:) The origin DNA-binding domain of SV40 T-antigen {Jc polyomavirus [TaxId: 10632]}
kvedpkdfpvdlhaflsqavfsnrtvasfavyttkekaqilykklmekysvtfisrhgfg
ghnilffltphrhrvsainnycqklctfsflickgvnkeylfysalcrqpyavveesiqg
glkehdfnpe

Timeline for d4lmdb_:

• d4lmdb_ first appeared in SCOPe 2.03
  
• d4lmdb_ appears in SCOPe 2.05
  
• d4lmdb_ appears in the current release, SCOPe 2.08