SCOPe 2.06: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.06
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.8: The "swivelling" beta/beta/alpha domain [52008] (10 superfamilies)
3 layers: b/b/a; the central sheet is parallel, and the other one is antiparallel; there are some variations in topology
this domain is thought to be mobile in most multi-domain proteins known to contain it

Superfamily c.8.8: Putative cyclase [102198] (2 families)
contains mixed beta-sheet barrel, closed n=7, S=10
Family c.8.8.0: automated matches [238093] (1 protein)
not a true family
Protein automated matches [238095] (3 species)
not a true protein

Species:

Bacillus anthracis [TaxId:198094] [256229] (3 PDB entries)
1. Domains for 4co9:
  1. Domain d4co9a_: 4co9 A: [251375]
    automated match to d4coba_
    complexed with dio, gxt, mg, zn
  2. Domain d4co9b_: 4co9 B: [251376]
    automated match to d4coba_
    complexed with dio, gxt, mg, zn
  3. Domain d4co9c_: 4co9 C: [251377]
    automated match to d4coba_
    complexed with dio, gxt, mg, zn
  4. Domain d4co9d_: 4co9 D: [251378]
    automated match to d4coba_
    complexed with dio, gxt, mg, zn
2. Domains for 4coa:
  1. Domain d4coaa_: 4coa A: [307148]
    automated match to d4co9a_
    complexed with mg, vnj, zn
  2. Domain d4coab_: 4coa B: [307149]
    automated match to d4co9a_
    complexed with mg, vnj, zn
  3. Domain d4coac_: 4coa C: [307150]
    automated match to d4co9a_
    complexed with mg, vnj, zn
  4. Domain d4coad_: 4coa D: [307151]
    automated match to d4co9a_
    complexed with mg, vnj, zn
3. Domains for 4cz1:
  1. Domain d4cz1a_: 4cz1 A: [256749]
    automated match to d4co9a_
    complexed with mg, vnj, zn
  2. Domain d4cz1b_: 4cz1 B: [257772]
    automated match to d4co9a_
    complexed with mg, vnj, zn
  3. Domain d4cz1c_: 4cz1 C: [257771]
    automated match to d4co9a_
    complexed with mg, vnj, zn
  4. Domain d4cz1d_: 4cz1 D: [259348]
    automated match to d4co9a_
    complexed with mg, vnj, zn
Burkholderia cenocepacia [TaxId:216591] [238096] (1 PDB entry)
- Domains for 4cog:
  1. Domain d4coga_: 4cog A: [238098]
    automated match to d3krvb_
    complexed with cd, edo, gol, mg, peg, zn
  2. Domain d4cogb_: 4cog B: [238109]
    automated match to d3krvb_
    complexed with cd, edo, gol, mg, peg, zn
  3. Domain d4cogc_: 4cog C: [238108]
    automated match to d3krvb_
    complexed with cd, edo, gol, mg, peg, zn
  4. Domain d4cogd_: 4cog D: [238112]
    automated match to d3krvb_
    complexed with cd, edo, gol, mg, peg, zn
Pseudomonas aeruginosa, PA01 [TaxId:208964] [238104] (1 PDB entry)
- Domains for 4cob:
  1. Domain d4coba_: 4cob A: [238106]
    automated match to d3krvb_
    complexed with zn
  2. Domain d4cobb_: 4cob B: [238114]
    automated match to d3krvb_
    complexed with zn

More info for Protein automated matches from c.8.8.0: automated matches

Timeline for Protein automated matches from c.8.8.0: automated matches:

Protein automated matches from c.8.8.0: automated matches first appeared in SCOPe 2.03
Protein automated matches from c.8.8.0: automated matches appears in SCOPe 2.05
Protein automated matches from c.8.8.0: automated matches appears in SCOPe 2.07
Protein automated matches from c.8.8.0: automated matches appears in the current release, SCOPe 2.08