SCOPe 2.06: Domain d4nd7a1: 4nd7 A:1-306

Lineage for d4nd7a1 (4nd7 A:1-306)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
   core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145

4. Superfamily c.26.1: Nucleotidylyl transferase [52374] (6 families)

5. Family c.26.1.1: Class I aminoacyl-tRNA synthetases (RS), catalytic domain [52375] (13 proteins)
   contains a conserved all-alpha subdomain at the C-terminal extension

6. Protein automated matches [190581] (9 species)
   not a true protein

7. Species Methanocaldococcus jannaschii [TaxId:243232] [193079] (10 PDB entries)

8. Domain d4nd7a1: 4nd7 A:1-306 [237841]
   Other proteins in same PDB: d4nd7a2
   automated match to d1j1ua_
   complexed with bme, na

Details for d4nd7a1

PDB Entry: 4nd7, 2 Å

PDB Description: crystal structure of apo 3-nitro-tyrosine trna synthetase (5b) in the closed form

PDB Compounds: (A:) Tyrosine--tRNA ligase

SCOPe Domain Sequences for d4nd7a1:

Sequence; same for both SEQRES and ATOM records:

>d4nd7a1 c.26.1.1 (A:1-306) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}
mdefemikrntseiiseeelrevlkkdeksahigfepsgkihlghylqikkmidlqnagf
diiilladlcaylnqkgeldeirkigdynkkvfeamglkakyvygsefqldkdytlnvyr
lalkttlkrarrsmeliaredenpkvaeviypimqvnsahyrgvdvavggmeqrkihmla
rellpkkvvcihnpvltgldgegkmssskgnfiavddspeeirakikkaycpagvvegnp
imeiakyfleypltikrpekfggdltvnsyeeleslfknkelhpmdlknavaeelikile
pirkrl

Timeline for d4nd7a1:

• d4nd7a1 first appeared in SCOPe 2.03, called d4nd7a_
  
• d4nd7a1 was called d4nd7a_ in SCOPe 2.05
  
• d4nd7a1 appears in SCOPe 2.07
  
• d4nd7a1 appears in the current release, SCOPe 2.08