SCOPe 2.08: Domain d4nuub1: 4nuu B:211-508

Lineage for d4nuub1 (4nuu B:211-508)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.264: Duffy binding domain-like [140923] (1 superfamily)
   consist of two subdomains, each containing a three-helical bundle

4. Superfamily a.264.1: Duffy binding domain-like [140924] (2 families)
   automatically mapped to Pfam PF05424

5. Family a.264.1.1: Duffy binding domain [140925] (3 proteins)
   Pfam PF05424

6. Protein automated matches [191262] (2 species)
   not a true protein

7. Species Plasmodium vivax [TaxId:126793] [189825] (5 PDB entries)

8. Domain d4nuub1: 4nuu B:211-508 [236628]
   Other proteins in same PDB: d4nuua2, d4nuub2
   automated match to d3rrca_

Details for d4nuub1

PDB Entry: 4nuu, 1.95 Å

PDB Description: heterotrimer structure of region ii from plasmodium vivax duffy binding protein (pvdbp) bound to the ectodomain of the duffy antigen receptor for chemokines (darc)

PDB Compounds: (B:) Duffy receptor

SCOPe Domain Sequences for d4nuub1:

Sequence, based on SEQRES records:

>d4nuub1 a.264.1.1 (B:211-508) automated matches {Plasmodium vivax [TaxId: 126793]}
ntvmkncnykrkrrerdwdcntkkdvcipdrryqlcmkeltnlvnntdtnfhrditfrkl
ylkrkliydaavegdlllklnnyrynkdfckdirwslgdfgdiimgtdmegigyskvven
nlrsifgtdekaqqrrkqwwneskaqiwtammysvkkrlkgnfiwicklnvavniepqiy
rwirewgrdyvselptevqklkekcdgkinytdkkvckvppcqnacksydqwitrkknqw
dvlsnkfisvknaekvqtagivtpydilkqeldefnevafeneinkrdgayielcvcs

Sequence, based on observed residues (ATOM records):

>d4nuub1 a.264.1.1 (B:211-508) automated matches {Plasmodium vivax [TaxId: 126793]}
ntvmkncnykrkrrerdwdcntkkdvcipdrryqlcmkeltnlfhrditfrklylkrkli
ydaavegdlllklnnyrynkdfckdirwslgdfgdiimgtdmegigyskvvennlrsifg
tdekaqqrrkqwwneskaqiwtammysvkkrlkgnfiwicklnvavniepqiyrwirewg
rdyvselptevqklkekcdgkinytdkkvckvppcqnacksydqwitrkknqwdvlsnkf
isvknaekqtagivtpydilkqeldefnevafeneinkrdgayielcvcs

Timeline for d4nuub1:

• d4nuub1 first appeared in SCOPe 2.03, called d4nuub_
  
• d4nuub1 appears in SCOPe 2.07