SCOPe 2.05: Domain d1pgsa1: 1pgs A:4-140

Lineage for d1pgsa1 (1pgs A:4-140)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.1: PHM/PNGase F [49742] (2 families)
   members of this superfamily bind peptide substrates
   duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits

5. Family b.121.1.1: Glycosyl-asparaginase [49743] (2 proteins)

6. Protein Peptide:N-glycosidase F, PNGase F [49744] (1 species)

7. Species Flavobacterium meningosepticum [TaxId:238] [49745] (3 PDB entries)

8. Domain d1pgsa1: 1pgs A:4-140 [23653]

Details for d1pgsa1

PDB Entry: 1pgs, 1.8 Å

PDB Description: the three-dimensional structure of pngase f, a glycosylasparaginase from flavobacterium meningosepticum

PDB Compounds: (A:) peptide-n(4)-(n-acetyl-beta-d-glucosaminyl)asparagine amidase f

SCOPe Domain Sequences for d1pgsa1:

Sequence; same for both SEQRES and ATOM records:

>d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]}
dntvniktfdkvknafgdglsqsaegtftfpadvttvktikmfiknecpnktcdewdrya
nvyvknkttgewyeigrfitpywvgteklprgleidvtdfksllsgntelkiytetwlak
greysvdfdivygtpdy

Timeline for d1pgsa1:

• d1pgsa1 first appeared (with stable ids) in SCOP 1.55, called d1pgs_1
  
• d1pgsa1 appears in SCOPe 2.04
  
• d1pgsa1 appears in SCOPe 2.06
  
• d1pgsa1 appears in the current release, SCOPe 2.08