Lineage for d1pgsa1 (1pgs A:4-140)

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1563153Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 1563154Superfamily b.121.1: PHM/PNGase F [49742] (2 families) (S)
    members of this superfamily bind peptide substrates
    duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits
  5. 1563155Family b.121.1.1: Glycosyl-asparaginase [49743] (2 proteins)
  6. 1563156Protein Peptide:N-glycosidase F, PNGase F [49744] (1 species)
  7. 1563157Species Flavobacterium meningosepticum [TaxId:238] [49745] (3 PDB entries)
  8. 1563158Domain d1pgsa1: 1pgs A:4-140 [23653]

Details for d1pgsa1

PDB Entry: 1pgs (more details), 1.8 Å

PDB Description: the three-dimensional structure of pngase f, a glycosylasparaginase from flavobacterium meningosepticum
PDB Compounds: (A:) peptide-n(4)-(n-acetyl-beta-d-glucosaminyl)asparagine amidase f

SCOPe Domain Sequences for d1pgsa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F {Flavobacterium meningosepticum [TaxId: 238]}

SCOPe Domain Coordinates for d1pgsa1:

Click to download the PDB-style file with coordinates for d1pgsa1.
(The format of our PDB-style files is described here.)

Timeline for d1pgsa1:

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