SCOPe 2.08: Domain d4naka_: 4nak A:

Lineage for d4naka_ (4nak A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.13: Cytidylytransferase [68901] (7 proteins)

6. Protein 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) [64140] (4 species)

7. Species Thale cress (Arabidopsis thaliana), chloroplast [TaxId:3702] [142690] (12 PDB entries)
   Uniprot P69834 75-300

8. Domain d4naka_: 4nak A: [236467]
   automated match to d2yc3a_
   complexed with cd, dtt, k, pbq

Details for d4naka_

PDB Entry: 4nak, 1.8 Å

PDB Description: Arabidopsis thaliana IspD in complex with pentabromo-pseudilin

PDB Compounds: (A:) 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase, chloroplastic

SCOPe Domain Sequences for d4naka_:

Sequence, based on SEQRES records:

>d4naka_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
eksvsvillaggqgkrmkmsmpkqyipllgqpialysfftfsrmpevkeivvvcdpffrd
ifeeyeesidvdlsfaipgkerqdsvysglqeidvnselvcihdsarplvntedvekvlk
dgsavgaavlgvpakatikevnsdslvvktldrktlwemqtpqvikpellkkgfelvkse
glevtddvsiveylkhpvyvsqgsytnikvttpddlllaeril

Sequence, based on observed residues (ATOM records):

>d4naka_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
eksvsvillaggpkqyipllgqpialysfftfsrmpevkeivvvcdpffrdifeeyeesi
dvdlsfaipgkerqdsvysglqeidvnselvcihdsarplvntedvekvlkdgsavgaav
lgvpakatikevnsdslvvktlwemqtpqvikpellkkgfelvkseglevtddvsiveyl
khpvyvsqgsytnikvttpddlllaeril

Timeline for d4naka_:

• d4naka_ first appeared in SCOPe 2.03
  
• d4naka_ appears in SCOPe 2.07