SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d3zhda1 (3zhd A:1-118)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2017117Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 protein domains)
  6. 2019634Protein automated matches [190119] (22 species)
    not a true protein
  7. 2019694Species Human (Homo sapiens) [TaxId:9606] [188740] (166 PDB entries)
  8. 2019766Domain d3zhda1: 3zhd A:1-118 [235925]
    Other proteins in same PDB: d3zhda2, d3zhdb2
    automated match to d1vhpa_
    complexed with so4

Details for d3zhda1

PDB Entry: 3zhd (more details), 1.96 Å

PDB Description: The crystal structure of single domain antibody 8-4 scaffold.
PDB Compounds: (A:) mg8-4 scaffold antibody

SCOPe Domain Sequences for d3zhda1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3zhda1 b.1.1.1 (A:1-118) automated matches {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d3zhda1:

Click to download the PDB-style file with coordinates for d3zhda1.
(The format of our PDB-style files is described here.)

Timeline for d3zhda1:

View in 3D
Domains from same chain:
(mouse over for more information)