SCOPe 2.05: Domain d4npya2: 4npy A:107-208

Lineage for d4npya2 (4npy A:107-208)

1. Root: SCOPe 2.05

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (31 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.0: automated matches [191470] (1 protein)
   not a true family

6. Protein automated matches [190740] (26 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187920] (558 PDB entries)

8. Domain d4npya2: 4npy A:107-208 [235829]
   automated match to d4npyl2
   complexed with gol

Details for d4npya2

PDB Entry: 4npy, 1.8 Å

PDB Description: crystal structure of germline fab pgt121, a putative precursor of the broadly reactive and potent hiv-1 neutralizing antibody

PDB Compounds: (A:) germline PGT121 light chain

SCOPe Domain Sequences for d4npya2:

Sequence; same for both SEQRES and ATOM records:

>d4npya2 b.1.1.0 (A:107-208) automated matches {Human (Homo sapiens) [TaxId: 9606]}
gqpkaapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpsk
qsnnkyaassylsltpeqwkshksyscqvthegstvektvap

Timeline for d4npya2:

• d4npya2 first appeared in SCOPe 2.03
  
• d4npya2 appears in SCOPe 2.04
  
• d4npya2 appears in SCOPe 2.06
  
• d4npya2 appears in the current release, SCOPe 2.08