SCOPe 2.03: Domain d4nasb2: 4nas B:123-408

Lineage for d4nasb2 (4nas B:123-408)

1. Root: SCOPe 2.03

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.0: automated matches [227297] (1 protein)
   not a true family

6. Protein automated matches [227123] (6 species)
   not a true protein

7. Species Alicyclobacillus acidocaldarius [TaxId:521098] [229001] (1 PDB entry)

8. Domain d4nasb2: 4nas B:123-408 [235748]
   Other proteins in same PDB: d4nasa1, d4nasb1, d4nasc1, d4nasd1
   automated match to d4nasa2
   complexed with ca, cl, fmt, gol

Details for d4nasb2

PDB Entry: 4nas, 1.92 Å

PDB Description: The crystal structure of a rubisco-like protein (MtnW) from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446

PDB Compounds: (B:) Ribulose-bisphosphate carboxylase

SCOPe Domain Sequences for d4nasb2:

Sequence; same for both SEQRES and ATOM records:

>d4nasb2 c.1.14.0 (B:123-408) automated matches {Alicyclobacillus acidocaldarius [TaxId: 521098]}
pgpkfgvegvrrrlgaynrplvmsifkacagltldelveafgeqaeggvdlvkddeifft
eayatpedrvrayaakadeiaqrtgrrtayavnltgpvhslrerarrlaelgagallvnv
vaygydvvadlardpdvdvpilahpavsgalygspnygiaadivlgqlmrlagadigifp
smygsvtlgreatdrllqhlraegphkpvlpapsagiypglvprlyqdfgvdlvlnaggg
ihghpggarmggraffdaiwavehgvpleeaakdrpalrqalekwg

Timeline for d4nasb2:

• d4nasb2 is new in SCOPe 2.03-stable
  
• d4nasb2 appears in SCOPe 2.04
  
• d4nasb2 appears in the current release, SCOPe 2.08