Lineage for d4mbyg_ (4mby G:)

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1812227Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 1813264Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 1813265Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 1813335Protein automated matches [191200] (6 species)
    not a true protein
  7. 1813342Species Human polyomavirus 9 [TaxId:943908] [229433] (7 PDB entries)
  8. 1813349Domain d4mbyg_: 4mby G: [235577]
    automated match to d4mbxd_
    protein/DNA complex; complexed with ca, cl, edo, ipa

Details for d4mbyg_

PDB Entry: 4mby (more details), 1.48 Å

PDB Description: structure of b-lymphotropic polyomavirus vp1 in complex with 3'- sialyllactose
PDB Compounds: (G:) Major capsid protein VP1

SCOPe Domain Sequences for d4mbyg_:

Sequence, based on SEQRES records: (download)

>d4mbyg_ b.121.6.1 (G:) automated matches {Human polyomavirus 9 [TaxId: 943908]}
shmggvevlevrtgpdaitqieaylnprmgnnipsedlygysnsintafskasdtpnkdt
lpcysvaviklpllnedmtcdtilmweavsvktevvgisslvnlhqggkyiygsssgcvp
vqgttyhmfavggeplelqglvasstatypddvvaiknmkpgnqgldpkakalldkdgky
pvevwcpdpsknentryygsftggattppvmqftnsvttvlldengvgplckgdklflsc
adiagvhtnysetqvwrglpryfnvtlrkrivk

Sequence, based on observed residues (ATOM records): (download)

>d4mbyg_ b.121.6.1 (G:) automated matches {Human polyomavirus 9 [TaxId: 943908]}
shmggvevlevrtgpdaitqieaylnprmgnnipsedlygysnsintafskasdtpnkdt
lpcysvaviklpllnmtctilmweavsvktevvgisslvnlhqggkyiygsssgcvpvqg
ttyhmfavggeplelqglvasstatypddvvaiknmkpgnqgldpkakalldkdgkypve
vwcpdpsknentryygsftggattppvmqftnsvttvlldengvgplckgdklflscadi
agvhtnysetqvwrglpryfnvtlrkrivk

SCOPe Domain Coordinates for d4mbyg_:

Click to download the PDB-style file with coordinates for d4mbyg_.
(The format of our PDB-style files is described here.)

Timeline for d4mbyg_: