SCOPe 2.06: Domain d1qjy3_: 1qjy 3:

Lineage for d1qjy3_ (1qjy 3:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein Rhinovirus coat proteins [49670] (5 species)

7. Species Human rhinovirus 16, (HRV-16) [TaxId:31708] [49672] (9 PDB entries)

8. Domain d1qjy3_: 1qjy 3: [23527]
   protein/RNA complex; complexed with myr, w03, zn

Details for d1qjy3_

PDB Entry: 1qjy, 2.8 Å

PDB Description: human rhinovirus 16 coat protein in complex with antiviral compound vp65099

PDB Compounds: (3:) protein vp3

SCOPe Domain Sequences for d1qjy3_:

Sequence; same for both SEQRES and ATOM records:

>d1qjy3_ b.121.4.1 (3:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
glpvyvtpgsgqfmttddmqspcalpwyhptkeifipgevknliemcqvdtlipinstqs
nignvsmytvtlspqtklaeeifaikvdiashplattligeiasyfthwtgslrfsfmfc
gtanttlkvllaytppgigkprsrkeamlgthvvwdvglqstvslvvpwisasqyrfttp
dtyssagyitcwyqtnfvvppntpntaemlcfvsgckdfclrmardtdlhkqtgpitq

Timeline for d1qjy3_:

• d1qjy3_ first appeared (with stable ids) in SCOP 1.55
  
• d1qjy3_ appears in SCOPe 2.05
  
• d1qjy3_ appears in SCOPe 2.07
  
• d1qjy3_ appears in the current release, SCOPe 2.08