Lineage for d1rue3_ (1rue 3:)

  1. Root: SCOP 1.65
  2. 287094Class b: All beta proteins [48724] (126 folds)
  3. 304390Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 304471Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (7 families) (S)
  5. 304472Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (9 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 304583Protein Rhinovirus coat proteins [49670] (5 species)
  7. 304620Species Human rhinovirus B 14 (HRV-14) [TaxId:12131] [49671] (28 PDB entries)
  8. 304635Domain d1rue3_: 1rue 3: [23470]

Details for d1rue3_

PDB Entry: 1rue (more details), 2.9 Å

PDB Description: rhinovirus 14 site directed mutant n1219a complexed with antiviral compound win 52035

SCOP Domain Sequences for d1rue3_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1rue3_ b.121.4.1 (3:) Rhinovirus coat proteins {Human rhinovirus B 14 (HRV-14)}
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte

SCOP Domain Coordinates for d1rue3_:

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(The format of our PDB-style files is described here.)

Timeline for d1rue3_: