Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2412856Fold b.160: L,D-transpeptidase catalytic domain-like [141522] (1 superfamily)
    barrel, closed; n=8, S=10; one overside connection
  4. 2412857Superfamily b.160.1: L,D-transpeptidase catalytic domain-like [141523] (1 family) (S)
    automatically mapped to Pfam PF03734
  5. 2412858Family b.160.1.1: L,D-transpeptidase catalytic domain-like [141524] (3 protein domains)
    Pfam PF03734; ErfK/YbiS/YcfS/YnhG
  6. 2412869Protein automated matches [234004] (2 species)
    not a true protein

Species:

  1. 2412870Bacillus subtilis [TaxId:1423] [234005] (3 PDB entries)
    1. Domains for 4a1i:
      1. 2412871Domain d4a1ia2: 4a1i A:49-164 [234006]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      2. 2412872Domain d4a1ib2: 4a1i B:49-164 [234008]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      3. 2412873Domain d4a1ic2: 4a1i C:49-164 [234020]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      4. 2412874Domain d4a1id2: 4a1i D:49-164 [234022]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      5. 2412875Domain d4a1ie2: 4a1i E:49-164 [234013]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      6. 2412876Domain d4a1if2: 4a1i F:49-164 [234010]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      7. 2412877Domain d4a1ig2: 4a1i G:49-164 [234014]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      8. 2412878Domain d4a1ih2: 4a1i H:49-164 [234018]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
    2. Domains for 4a1j:
      1. 2412880Domain d4a1ja2: 4a1j A:49-164 [234016]
        Other proteins in same PDB: d4a1ja1, d4a1ja3, d4a1jb1, d4a1jb3
        automated match to d1y7ma1
        complexed with so4
      2. 2412881Domain d4a1jb2: 4a1j B:49-164 [234026]
        Other proteins in same PDB: d4a1ja1, d4a1ja3, d4a1jb1, d4a1jb3
        automated match to d1y7ma1
        complexed with so4
    3. Domain for 4a1k:
  2. 2412882Bacillus subtilis [TaxId:224308] [256166] (2 PDB entries)
    1. Domain for 3zqd:
    2. Domain for 4a52:

More info for Protein automated matches from b.160.1.1: L,D-transpeptidase catalytic domain-like

Timeline for Protein automated matches from b.160.1.1: L,D-transpeptidase catalytic domain-like: