Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.160: L,D-transpeptidase catalytic domain-like [141522] (1 superfamily)
    barrel, closed; n=8, S=10; one overside connection
  4. Superfamily b.160.1: L,D-transpeptidase catalytic domain-like [141523] (1 family) (S)
    automatically mapped to Pfam PF03734
  5. Family b.160.1.1: L,D-transpeptidase catalytic domain-like [141524] (3 proteins)
    Pfam PF03734; ErfK/YbiS/YcfS/YnhG
  6. Protein automated matches [234004] (6 species)
    not a true protein

Species:

  1. Bacillus subtilis [TaxId:1423] [234005] (3 PDB entries)
    1. Domains for 4a1i:
      1. Domain d4a1ia2: 4a1i A:49-164 [234006]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      2. Domain d4a1ib2: 4a1i B:49-164 [234008]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      3. Domain d4a1ic2: 4a1i C:49-164 [234020]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      4. Domain d4a1id2: 4a1i D:49-164 [234022]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      5. Domain d4a1ie2: 4a1i E:49-164 [234013]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      6. Domain d4a1if2: 4a1i F:49-164 [234010]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      7. Domain d4a1ig2: 4a1i G:49-164 [234014]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
      8. Domain d4a1ih2: 4a1i H:49-164 [234018]
        Other proteins in same PDB: d4a1ia1, d4a1ia3, d4a1ib1, d4a1ib3, d4a1ic1, d4a1ic3, d4a1id1, d4a1id3, d4a1ie1, d4a1if1, d4a1ig1, d4a1ih1
        automated match to d1y7ma1
        complexed with cd, cl, so4
    2. Domains for 4a1j:
      1. Domain d4a1ja2: 4a1j A:49-164 [234016]
        Other proteins in same PDB: d4a1ja1, d4a1ja3, d4a1jb1, d4a1jb3
        automated match to d1y7ma1
        complexed with so4
      2. Domain d4a1jb2: 4a1j B:49-164 [234026]
        Other proteins in same PDB: d4a1ja1, d4a1ja3, d4a1jb1, d4a1jb3
        automated match to d1y7ma1
        complexed with so4
    3. Domain for 4a1k:
  2. Bacillus subtilis [TaxId:224308] [256166] (2 PDB entries)
    1. Domain for 3zqd:
    2. Domain for 4a52:
  3. Enterococcus faecium [TaxId:1352] [363176] (1 PDB entry)
  4. Mycobacterium tuberculosis [TaxId:1773] [419883] (5 PDB entries)
    1. Domains for 3vyo:
      1. Domain d3vyoa2: 3vyo A:252-408 [413505]
        Other proteins in same PDB: d3vyoa1, d3vyob1
        automated match to d3tura2
        mutant
      2. Domain d3vyob2: 3vyo B:252-408 [413507]
        Other proteins in same PDB: d3vyoa1, d3vyob1
        automated match to d3tura2
        mutant
    2. Domains for 3vyp:
      1. Domain d3vypa2: 3vyp A:252-408 [413509]
        Other proteins in same PDB: d3vypa1, d3vypb1
        automated match to d3tura2
        complexed with gol, mxr
      2. Domain d3vypb2: 3vyp B:252-405 [413511]
        Other proteins in same PDB: d3vypa1, d3vypb1
        automated match to d3tura2
        complexed with gol, mxr
    3. Domain for 4gsq:
    4. Domain for 4gsr:
    5. Domains for 4gsu:
      1. Domain d4gsub2: 4gsu B:252-408 [413808]
        Other proteins in same PDB: d4gsua1, d4gsub1
        automated match to d3tura2
        complexed with dwz
      2. Domain d4gsua2: 4gsu A:252-408 [413806]
        Other proteins in same PDB: d4gsua1, d4gsub1
        automated match to d3tura2
        complexed with dwz
  5. Mycobacterium tuberculosis [TaxId:83332] [419972] (10 PDB entries)
    1. Domains for 5lb1:
      1. Domain d5lb1b2: 5lb1 B:252-407 [415011]
        Other proteins in same PDB: d5lb1a1, d5lb1b1, d5lb1b3
        automated match to d3tura2
        complexed with mnb
      2. Domain d5lb1a2: 5lb1 A:252-407 [415009]
        Other proteins in same PDB: d5lb1a1, d5lb1b1, d5lb1b3
        automated match to d3tura2
        complexed with mnb
    2. Domains for 6iyv:
      1. Domain d6iyva2: 6iyv A:252-407 [416185]
        Other proteins in same PDB: d6iyva1, d6iyvb1
        automated match to d3tura2
        complexed with 2rg, gol, peg, so4, trs
      2. Domain d6iyvb2: 6iyv B:252-405 [416187]
        Other proteins in same PDB: d6iyva1, d6iyvb1
        automated match to d3tura2
        complexed with 2rg, gol, peg, so4, trs
    3. Domains for 6iyw:
      1. Domain d6iywf2: 6iyw F:252-405 [416199]
        Other proteins in same PDB: d6iywa1, d6iywb1, d6iywc1, d6iywd1, d6iywe1, d6iywf1
        automated match to d3tura2
        complexed with gol, im2
      2. Domain d6iywd2: 6iyw D:252-405 [416195]
        Other proteins in same PDB: d6iywa1, d6iywb1, d6iywc1, d6iywd1, d6iywe1, d6iywf1
        automated match to d3tura2
        complexed with gol, im2
      3. Domain d6iywa2: 6iyw A:252-406 [416189]
        Other proteins in same PDB: d6iywa1, d6iywb1, d6iywc1, d6iywd1, d6iywe1, d6iywf1
        automated match to d3tura2
        complexed with gol, im2
      4. Domain d6iywe2: 6iyw E:252-405 [416197]
        Other proteins in same PDB: d6iywa1, d6iywb1, d6iywc1, d6iywd1, d6iywe1, d6iywf1
        automated match to d3tura2
        complexed with gol, im2
      5. Domain d6iywc2: 6iyw C:252-407 [416193]
        Other proteins in same PDB: d6iywa1, d6iywb1, d6iywc1, d6iywd1, d6iywe1, d6iywf1
        automated match to d3tura2
        complexed with gol, im2
      6. Domain d6iywb2: 6iyw B:252-406 [416191]
        Other proteins in same PDB: d6iywa1, d6iywb1, d6iywc1, d6iywd1, d6iywe1, d6iywf1
        automated match to d3tura2
        complexed with gol, im2
    4. Domains for 6lqb:
      1. Domain d6lqbb2: 6lqb B:252-405 [416343]
        Other proteins in same PDB: d6lqba1, d6lqbb1
        automated match to d3tura2
        complexed with 2rg, acy, gol
      2. Domain d6lqba2: 6lqb A:252-407 [416341]
        Other proteins in same PDB: d6lqba1, d6lqbb1
        automated match to d3tura2
        complexed with 2rg, acy, gol
    5. Domains for 7a0z:
      1. Domain d7a0zb2: 7a0z B:252-408 [417506]
        Other proteins in same PDB: d7a0za1, d7a0zb1
        automated match to d3tura2
        complexed with bt6, tam
      2. Domain d7a0za2: 7a0z A:252-408 [417504]
        Other proteins in same PDB: d7a0za1, d7a0zb1
        automated match to d3tura2
        complexed with bt6, tam
    6. Domains for 7a10:
      1. Domain d7a10b2: 7a10 B:252-407 [417510]
        Other proteins in same PDB: d7a10a1, d7a10b1
        automated match to d3tura2
        complexed with qu5
      2. Domain d7a10a2: 7a10 A:252-408 [417508]
        Other proteins in same PDB: d7a10a1, d7a10b1
        automated match to d3tura2
        complexed with qu5
    7. Domains for 7a11:
      1. Domain d7a11a2: 7a11 A:252-408 [417512]
        Other proteins in same PDB: d7a11a1, d7a11b1
        automated match to d3tura2
        complexed with act, xl3
      2. Domain d7a11b2: 7a11 B:252-408 [417514]
        Other proteins in same PDB: d7a11a1, d7a11b1
        automated match to d3tura2
        complexed with act, xl3
    8. Domains for 7a1c:
      1. Domain d7a1ca2: 7a1c A:252-408 [417516]
        Other proteins in same PDB: d7a1ca1, d7a1cb1
        automated match to d3tura2
        complexed with dms
      2. Domain d7a1cb2: 7a1c B:252-408 [417518]
        Other proteins in same PDB: d7a1ca1, d7a1cb1
        automated match to d3tura2
        complexed with dms
    9. Domains for 7a1e:
      1. Domain d7a1ea2: 7a1e A:252-408 [417520]
        Other proteins in same PDB: d7a1ea1, d7a1eb1
        automated match to d3tura2
        complexed with act, sdq
      2. Domain d7a1eb2: 7a1e B:252-408 [417522]
        Other proteins in same PDB: d7a1ea1, d7a1eb1
        automated match to d3tura2
        complexed with act, sdq
    10. Domain for 7kem:
  6. Mycobacterium tuberculosis [TaxId:83331] [419974] (1 PDB entry)

More info for Protein automated matches from b.160.1.1: L,D-transpeptidase catalytic domain-like

Timeline for Protein automated matches from b.160.1.1: L,D-transpeptidase catalytic domain-like: