Lineage for d1c8ha_ (1c8h A:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076263Superfamily b.121.5: ssDNA viruses [88645] (3 families) (S)
  5. 2076282Family b.121.5.2: Parvoviridae-like VP [88646] (3 protein domains)
    automatically mapped to Pfam PF00740
  6. 2076286Protein Parvovirus (panleukopenia virus) capsid protein [49661] (6 species)
  7. 2076287Species Canine parvovirus [TaxId:10788] [49662] (7 PDB entries)
  8. 2076293Domain d1c8ha_: 1c8h A: [23378]
    complexed with ca

Details for d1c8ha_

PDB Entry: 1c8h (more details), 3.5 Å

PDB Description: canine parvovirus strain d empty capsid structure at ph 5.5
PDB Compounds: (A:) canine parvovirus capsid

SCOPe Domain Sequences for d1c8ha_:

Sequence, based on SEQRES records: (download)

>d1c8ha_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Canine parvovirus [TaxId: 10788]}
gvgistgtfnnqtefkflengwveitanssrlvhlnmpesenyrrvvvnnmdktavngnm
alddihaqivtpwslvdanawgvwfnpgdwqlivntmselhlvsfeqeifnvvlktvses
atqpptkvynndltaslmvaldsnntmpftpaamrsetlgfypwkptiptpwryyfqwdr
tlipshtgtsgtptniyhgtdpddvqfytiensvpvhllrtgdefatgtfffdckpcrlt
htwqtnralglppflnslpqsegatnfgdigvqqdkrrgvtqmgntnyiteatimrpaev
gysapyysfeastqgpfktpiaagrggaqtdenqaadgnpryafgrqhgqkttttgetpe
rftyiahqdtgrypegdwiqninfnlpvtndnvllptdpiggktginytnifntygplta
lnnvppvypngqiwdkefdtdlkprlhvnapfvcqnncpgqlfvkvapnltneydpdasa
nmsrivtysdfwwkgklvfkaklrashtwnpiqqmsinvdnqfnyvpsniggmkivyeks
qlaprkly

Sequence, based on observed residues (ATOM records): (download)

>d1c8ha_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Canine parvovirus [TaxId: 10788]}
gvgistgtfnnqtefkflengwveitanssrlvhlnmpesenyrrvvvnnmdktavngnm
alddihaqivtpwslvdanawgvwfnpgdwqlivntmselhlvsfeqeifnvvlktvsep
ptkvynndltaslmvaldsnntmpftpaamrsetlgfypwkptiptpwryyfqwdrtlip
shtgtsgtptniyhgtdpddvqfytiensvpvhllrtgdefatgtfffdckpcrlthtwq
tnralglppflnslpqsegatnfgdigvqqdkrrgvtqmgntnyiteatimrpaevgysa
pyysfeastqgpfktpiaagrggaqtdenqaadgnpryafgrqhgqkttttgetperfty
iahqdtgrypegdwiqninfnlpvtndnvllptdpiggktginytnifntygpltalnnv
ppvypngqiwdkefdtdlkprlhvnapfvcqnncpgqlfvkvapnltneydpdasanmsr
ivtysdfwwkgklvfkaklrashtwnpiqqmsinvdnqfnyvpsniggmkivyeksqlap
rkly

SCOPe Domain Coordinates for d1c8ha_:

Click to download the PDB-style file with coordinates for d1c8ha_.
(The format of our PDB-style files is described here.)

Timeline for d1c8ha_: