Lineage for d1vpsd_ (1vps D:)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. Protein Polyomavirus coat proteins [49657] (2 species)
  7. Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)
  8. Domain d1vpsd_: 1vps D: [23339]

Details for d1vpsd_

PDB Entry: 1vps (more details), 1.9 Å

PDB Description: polyomavirus vp1 pentamer complexed with a disialylated hexasaccharide
PDB Compounds: (D:) polyomavirus vp1 pentamer

SCOPe Domain Sequences for d1vpsd_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1vpsd_ b.121.6.1 (D:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}

SCOPe Domain Coordinates for d1vpsd_ are not available.

Timeline for d1vpsd_:

Domains from other chains:
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d1vpsa_, d1vpsb_, d1vpsc_, d1vpse_