SCOPe 2.06: Domain d1vpsc_: 1vps C:

Lineage for d1vpsc_ (1vps C:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein Polyomavirus coat proteins [49657] (2 species)

7. Species Murine polyomavirus, strain small-plaque 16 [TaxId:10634] [49658] (11 PDB entries)

8. Domain d1vpsc_: 1vps C: [23338]

Details for d1vpsc_

PDB Entry: 1vps, 1.9 Å

PDB Description: polyomavirus vp1 pentamer complexed with a disialylated hexasaccharide

PDB Compounds: (C:) polyomavirus vp1 pentamer

SCOPe Domain Sequences for d1vpsc_:

Sequence; same for both SEQRES and ATOM records:

>d1vpsc_ b.121.6.1 (C:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
ggmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspg
nntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntk
gistpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpi
skakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgp
lckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

Timeline for d1vpsc_:

• d1vpsc_ first appeared (with stable ids) in SCOP 1.55
  
• d1vpsc_ appears in SCOPe 2.05
  
• d1vpsc_ appears in SCOPe 2.07
  
• d1vpsc_ appears in the current release, SCOPe 2.08