SCOPe 2.08: Domain d1f8v.1: 1f8v A:,D:

Lineage for d1f8v.1 (1f8v A:,D:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.4: Nodaviridae-like VP [88638] (1 protein)

6. Protein Alphanodavirus capsid protein [49648] (3 species)

7. Species Pariacoto virus [TaxId:103782] [49651] (1 PDB entry)

8. Domain d1f8v.1: 1f8v A:,D: [23329]
   protein/RNA complex; complexed with ca, so4

Details for d1f8v.1

PDB Entry: 1f8v, 3 Å

PDB Description: the structure of pariacoto virus reveals a dodecahedral cage of duplex rna

PDB Compounds: (A:) mature capsid protein beta, (D:) mature capsid protein gamma

SCOPe Domain Sequences for d1f8v.1:

Sequence, based on SEQRES records:

>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto virus [TaxId: 103782]}
nrrnkarkvvsrstalvpmapasqrtgpaprkprkrnqalvrnprltdaglaflkcafaa
pdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivvapvpgfayfraevavgaq
pttfvgvpyptyatnfgagsqnglpavnnyskfryasmacglyptsnmmqfsgsvqvwrv
dlnlseavnpavtaitpapgvfanfvdkringlrgirplaprdnysgnfidgaytfafdk
stdfewcdfvrslefsesnvlgaatamkllapgggtdttltglgnvntlvykistptgav
ntailrtwncielqpytdsalfqfsgvsppfdplalecyhnlkmrfpvavssrenXskfw
egvlrvlnqisgtlsvipgpvgtisagvhqltgmym

Sequence, based on observed residues (ATOM records):

>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto virus [TaxId: 103782]}
nrrnkarkvvsrstalvpmapasqrtgpaprkprkrnqalvrnprltdaglaflkcafaa
pdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivvapvpgfayfraevavgaq
pttfvgvpyptyatnfgagsqnglpavnnyskfryasmacglyptsnmmqfsgsvqvwrv
dlnlseavnpavtaitpapgvfanfvdkringlrgirplaprdnysgnfidgaytfafdk
stdfewcdfvrslefsesnvlgaatamkllapgggtdttltglgnvntlvykistptgav
ntailrtwncielqpytdsalfqfsgvsppfdplalecyhnlkmrfpvavssrenXskfw
egvlrvlnqisgtlhqltgmym

Timeline for d1f8v.1:

• d1f8v.1 first appeared (with stable ids) in SCOP 1.55
  
• d1f8v.1 appears in SCOPe 2.07