Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2366402Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
    sandwich; 7 strands in 2 sheets, greek-key
    variations: some members have additional 1-2 strands
  4. 2366403Superfamily b.6.1: Cupredoxins [49503] (8 families) (S)
    contains copper-binding site
  5. 2366998Family b.6.1.2: Periplasmic domain of cytochrome c oxidase subunit II [49541] (3 proteins)
  6. 2367137Protein automated matches [233094] (2 species)
    not a true protein

Species:

  1. 2367138Cow (Bos taurus) [TaxId:9913] [255752] (7 PDB entries)
    1. Domains for 3asn:
      1. 2367139Domain d3asnb2: 3asn B:91-227 [245202]
        Other proteins in same PDB: d3asna_, d3asnb1, d3asnc_, d3asnd_, d3asne_, d3asnf_, d3asng_, d3asnh_, d3asni_, d3asnj_, d3asnk_, d3asnl_, d3asnm_, d3asnn_, d3asno1, d3asnp_, d3asnq_, d3asnr_, d3asns_, d3asnt_, d3asnu_, d3asnv_, d3asnw_, d3asnx_, d3asny_, d3asnz_
        automated match to d3ag3b2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 2367140Domain d3asno2: 3asn O:91-227 [245216]
        Other proteins in same PDB: d3asna_, d3asnb1, d3asnc_, d3asnd_, d3asne_, d3asnf_, d3asng_, d3asnh_, d3asni_, d3asnj_, d3asnk_, d3asnl_, d3asnm_, d3asnn_, d3asno1, d3asnp_, d3asnq_, d3asnr_, d3asns_, d3asnt_, d3asnu_, d3asnv_, d3asnw_, d3asnx_, d3asny_, d3asnz_
        automated match to d3ag3b2
        complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
    2. Domains for 5x1b:
      1. 2367141Domain d5x1bb2: 5x1b B:91-227 [337738]
        Other proteins in same PDB: d5x1ba_, d5x1bb1, d5x1bc_, d5x1bd_, d5x1be_, d5x1bf_, d5x1bg_, d5x1bh_, d5x1bi_, d5x1bj_, d5x1bk_, d5x1bl_, d5x1bm_, d5x1bn_, d5x1bo1, d5x1bp_, d5x1bq_, d5x1br_, d5x1bs_, d5x1bt_, d5x1bu_, d5x1bv_, d5x1bw_, d5x1bx_, d5x1by_, d5x1bz_
        automated match to d3ag3b2
        complexed with cdl, chd, cmo, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 2367142Domain d5x1bo2: 5x1b O:91-227 [337805]
        Other proteins in same PDB: d5x1ba_, d5x1bb1, d5x1bc_, d5x1bd_, d5x1be_, d5x1bf_, d5x1bg_, d5x1bh_, d5x1bi_, d5x1bj_, d5x1bk_, d5x1bl_, d5x1bm_, d5x1bn_, d5x1bo1, d5x1bp_, d5x1bq_, d5x1br_, d5x1bs_, d5x1bt_, d5x1bu_, d5x1bv_, d5x1bw_, d5x1bx_, d5x1by_, d5x1bz_
        automated match to d3ag3b2
        complexed with cdl, chd, cmo, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
    3. Domains for 5z84:
      1. 3056180Domain d5z84b2: 5z84 B:91-227 [356242]
        Other proteins in same PDB: d5z84a_, d5z84b1, d5z84c_, d5z84d_, d5z84e_, d5z84f_, d5z84g_, d5z84h_, d5z84i_, d5z84j_, d5z84k_, d5z84l_, d5z84m_, d5z84n_, d5z84o1, d5z84p_, d5z84q_, d5z84r_, d5z84s_, d5z84t_, d5z84u_, d5z84v_, d5z84w_, d5z84x_, d5z84y_, d5z84z_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 3056198Domain d5z84o2: 5z84 O:91-227 [356260]
        Other proteins in same PDB: d5z84a_, d5z84b1, d5z84c_, d5z84d_, d5z84e_, d5z84f_, d5z84g_, d5z84h_, d5z84i_, d5z84j_, d5z84k_, d5z84l_, d5z84m_, d5z84n_, d5z84o1, d5z84p_, d5z84q_, d5z84r_, d5z84s_, d5z84t_, d5z84u_, d5z84v_, d5z84w_, d5z84x_, d5z84y_, d5z84z_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
    4. Domains for 5z85:
      1. 3056187Domain d5z85b2: 5z85 B:91-227 [356249]
        Other proteins in same PDB: d5z85a_, d5z85b1, d5z85c_, d5z85d_, d5z85e_, d5z85f_, d5z85g_, d5z85h_, d5z85i_, d5z85j_, d5z85k_, d5z85l_, d5z85m_, d5z85o1, d5z85p_, d5z85q_, d5z85s_, d5z85t_, d5z85u_, d5z85v_, d5z85w_, d5z85x_, d5z85y_, d5z85z_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 3056190Domain d5z85o2: 5z85 O:91-227 [356252]
        Other proteins in same PDB: d5z85a_, d5z85b1, d5z85c_, d5z85d_, d5z85e_, d5z85f_, d5z85g_, d5z85h_, d5z85i_, d5z85j_, d5z85k_, d5z85l_, d5z85m_, d5z85o1, d5z85p_, d5z85q_, d5z85s_, d5z85t_, d5z85u_, d5z85v_, d5z85w_, d5z85x_, d5z85y_, d5z85z_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
    5. Domains for 5z86:
      1. 3056073Domain d5z86o2: 5z86 O:91-227 [356135]
        Other proteins in same PDB: d5z86a_, d5z86b1, d5z86c_, d5z86d_, d5z86e_, d5z86f_, d5z86g_, d5z86h_, d5z86i_, d5z86j_, d5z86k_, d5z86l_, d5z86m_, d5z86n_, d5z86o1, d5z86p_, d5z86q_, d5z86r_, d5z86s_, d5z86t_, d5z86u_, d5z86v_, d5z86w_, d5z86x_, d5z86y_, d5z86z_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 3056160Domain d5z86b2: 5z86 B:91-227 [356222]
        Other proteins in same PDB: d5z86a_, d5z86b1, d5z86c_, d5z86d_, d5z86e_, d5z86f_, d5z86g_, d5z86h_, d5z86i_, d5z86j_, d5z86k_, d5z86l_, d5z86m_, d5z86n_, d5z86o1, d5z86p_, d5z86q_, d5z86r_, d5z86s_, d5z86t_, d5z86u_, d5z86v_, d5z86w_, d5z86x_, d5z86y_, d5z86z_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
    6. Domains for 5zco:
      1. 3056236Domain d5zcob2: 5zco B:91-227 [356298]
        Other proteins in same PDB: d5zcoa_, d5zcob1, d5zcoc_, d5zcod_, d5zcoe_, d5zcof_, d5zcog_, d5zcoh_, d5zcoi_, d5zcoj_, d5zcok_, d5zcol_, d5zcom_, d5zcon_, d5zcoo1, d5zcop_, d5zcoq_, d5zcor_, d5zcos_, d5zcot_, d5zcou_, d5zcov_, d5zcow_, d5zcox_, d5zcoy_, d5zcoz_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 3056254Domain d5zcoo2: 5zco O:91-227 [356316]
        Other proteins in same PDB: d5zcoa_, d5zcob1, d5zcoc_, d5zcod_, d5zcoe_, d5zcof_, d5zcog_, d5zcoh_, d5zcoi_, d5zcoj_, d5zcok_, d5zcol_, d5zcom_, d5zcon_, d5zcoo1, d5zcop_, d5zcoq_, d5zcor_, d5zcos_, d5zcot_, d5zcou_, d5zcov_, d5zcow_, d5zcox_, d5zcoy_, d5zcoz_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
    7. Domains for 5zcp:
      1. 3056171Domain d5zcpo2: 5zcp O:91-227 [356233]
        Other proteins in same PDB: d5zcpa_, d5zcpb1, d5zcpc_, d5zcpd_, d5zcpe_, d5zcpf_, d5zcpg_, d5zcph_, d5zcpi_, d5zcpj_, d5zcpk_, d5zcpl_, d5zcpm_, d5zcpn_, d5zcpo1, d5zcpp_, d5zcpq_, d5zcpr_, d5zcps_, d5zcpt_, d5zcpu_, d5zcpv_, d5zcpw_, d5zcpx_, d5zcpy_, d5zcpz_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
      2. 3056218Domain d5zcpb2: 5zcp B:91-227 [356280]
        Other proteins in same PDB: d5zcpa_, d5zcpb1, d5zcpc_, d5zcpd_, d5zcpe_, d5zcpf_, d5zcpg_, d5zcph_, d5zcpi_, d5zcpj_, d5zcpk_, d5zcpl_, d5zcpm_, d5zcpn_, d5zcpo1, d5zcpp_, d5zcpq_, d5zcpr_, d5zcps_, d5zcpt_, d5zcpu_, d5zcpv_, d5zcpw_, d5zcpx_, d5zcpy_, d5zcpz_
        automated match to d3ag3b2
        complexed with azi, cdl, chd, cu, cua, dmu, edo, hea, mg, na, pek, pgv, psc, tgl, unx, zn
  2. 2367143Rhodobacter sphaeroides [TaxId:272943] [233095] (4 PDB entries)
    1. Domains for 3om3:
      1. 2367150Domain d3om3b2: 3om3 B:130-281 [233098]
        Other proteins in same PDB: d3om3a_, d3om3b1, d3om3b3, d3om3c_, d3om3d1, d3om3d3
        automated match to d1m56b1
        complexed with ca, cd, cu1, dmu, hea, hth, mg, trd; mutant
      2. 2367151Domain d3om3d2: 3om3 D:130-281 [233096]
        Other proteins in same PDB: d3om3a_, d3om3b1, d3om3b3, d3om3c_, d3om3d1, d3om3d3
        automated match to d1m56b1
        complexed with ca, cd, cu1, dmu, hea, hth, mg, trd; mutant
    2. Domains for 3oma:
      1. 2367148Domain d3omab2: 3oma B:130-281 [239572]
        Other proteins in same PDB: d3omaa_, d3omab1, d3omab3, d3omac_, d3omad1, d3omad3
        automated match to d3om3d2
        complexed with ca, cd, cu, cu1, dmu, hea, hth, mg, oh, trd; mutant
      2. 2367149Domain d3omad2: 3oma D:130-281 [239574]
        Other proteins in same PDB: d3omaa_, d3omab1, d3omab3, d3omac_, d3omad1, d3omad3
        automated match to d3om3d2
        complexed with ca, cd, cu, cu1, dmu, hea, hth, mg, oh, trd; mutant
    3. Domains for 3omi:
      1. 2367146Domain d3omib2: 3omi B:130-281 [239576]
        Other proteins in same PDB: d3omia_, d3omib1, d3omib3, d3omic_, d3omid1, d3omid3
        automated match to d3om3d2
        complexed with ca, cd, cl, cu, cu1, dmu, hea, hth, mg, oh, trd; mutant
      2. 2367147Domain d3omid2: 3omi D:130-281 [239578]
        Other proteins in same PDB: d3omia_, d3omib1, d3omib3, d3omic_, d3omid1, d3omid3
        automated match to d3om3d2
        complexed with ca, cd, cl, cu, cu1, dmu, hea, hth, mg, oh, trd; mutant
    4. Domains for 3omn:
      1. 2367144Domain d3omnb2: 3omn B:130-281 [239580]
        Other proteins in same PDB: d3omna_, d3omnb1, d3omnb3, d3omnc_, d3omnd1, d3omnd3
        automated match to d3om3d2
        complexed with ca, cd, cl, cu1, dmu, hea, hth, mg, oh, trd; mutant
      2. 2367145Domain d3omnd2: 3omn D:130-281 [239582]
        Other proteins in same PDB: d3omna_, d3omnb1, d3omnb3, d3omnc_, d3omnd1, d3omnd3
        automated match to d3om3d2
        complexed with ca, cd, cl, cu1, dmu, hea, hth, mg, oh, trd; mutant

More info for Protein automated matches from b.6.1.2: Periplasmic domain of cytochrome c oxidase subunit II

Timeline for Protein automated matches from b.6.1.2: Periplasmic domain of cytochrome c oxidase subunit II: