SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Vibrio fluvialis [TaxId: 676]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2130990Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
  4. 2130991Superfamily c.67.1: PLP-dependent transferases [53383] (10 families) (S)
  5. 2132229Family c.67.1.0: automated matches [191328] (1 protein)
    not a true family
  6. 2132230Protein automated matches [190151] (118 species)
    not a true protein
  7. 2133006Species Vibrio fluvialis [TaxId:676] [233050] (3 PDB entries)

PDB entries in Species: Vibrio fluvialis [TaxId: 676]:

  1. Domain(s) for 3nui:
    1. 2133015Domain d3nuia1: 3nui A:30-453 [233052]
      Other proteins in same PDB: d3nuia2, d3nuib2
      automated match to d3n5ma_
    2. 2133016Domain d3nuib1: 3nui B:30-453 [233051]
      Other proteins in same PDB: d3nuia2, d3nuib2
      automated match to d3n5ma_
  2. Domain(s) for 4e3q:
    1. 2133011Domain d4e3qa_: 4e3q A: [240086]
      automated match to d4e3qd_
      complexed with ben, na, pmp, so4
    2. 2133012Domain d4e3qb_: 4e3q B: [234358]
      automated match to d4grxa_
      complexed with ben, na, pmp, so4
    3. 2133013Domain d4e3qc_: 4e3q C: [240087]
      automated match to d4e3qd_
      complexed with ben, na, pmp, so4
    4. 2133014Domain d4e3qd_: 4e3q D: [234356]
      automated match to d4grxa_
      complexed with ben, na, pmp, so4
  3. Domain(s) for 4e3r:
    1. 2133007Domain d4e3ra_: 4e3r A: [234357]
      automated match to d4grxa_
      complexed with na, so4; mutant
    2. 2133008Domain d4e3rb_: 4e3r B: [240088]
      automated match to d4e3ra_
      complexed with na, so4; mutant
    3. 2133009Domain d4e3rc_: 4e3r C: [240089]
      automated match to d4e3ra_
      complexed with na, so4; mutant
    4. 2133010Domain d4e3rd_: 4e3r D: [240090]
      automated match to d4e3ra_
      complexed with na, so4; mutant

More info for Species Vibrio fluvialis [TaxId:676] from c.67.1.0 automated matches

Timeline for Species Vibrio fluvialis [TaxId:676] from c.67.1.0 automated matches: