Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2256768Class g: Small proteins [56992] (94 folds)
  3. 2262912Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. 2263118Superfamily g.41.5: Rubredoxin-like [57802] (4 families) (S)
  5. 2263360Family g.41.5.0: automated matches [232942] (1 protein)
    not a true family
  6. 2263361Protein automated matches [232943] (3 species)
    not a true protein

Species:

  1. 2263362Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId:887] [255262] (3 PDB entries)
    1. Domains for 2ji1:
      1. 2263367Domain d2ji1a2: 2ji1 A:2-37 [138332]
        Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
        automated match to d2ji2a2
        complexed with ca, fe, fe2
      2. 2263368Domain d2ji1b2: 2ji1 B:2-37 [138334]
        Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
        automated match to d2ji2a2
        complexed with ca, fe, fe2
      3. 2263369Domain d2ji1c2: 2ji1 C:2-37 [138336]
        Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
        automated match to d2ji2a2
        complexed with ca, fe, fe2
      4. 2263370Domain d2ji1d2: 2ji1 D:2-37 [138338]
        Other proteins in same PDB: d2ji1a1, d2ji1b1, d2ji1c1, d2ji1d1
        automated match to d2ji2a2
        complexed with ca, fe, fe2
    2. Domains for 2ji2:
      1. 2263363Domain d2ji2a2: 2ji2 A:1-37 [138340]
        Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
        automated match to d2ji2a2
        complexed with ca, fe, fe2, no3; mutant
      2. 2263364Domain d2ji2b2: 2ji2 B:2-37 [138342]
        Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
        automated match to d2ji2b2
        complexed with ca, fe, fe2, no3; mutant
      3. 2263365Domain d2ji2c2: 2ji2 C:1-37 [138344]
        Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
        automated match to d2ji2c2
        complexed with ca, fe, fe2, no3; mutant
      4. 2263366Domain d2ji2d2: 2ji2 D:2-37 [138346]
        Other proteins in same PDB: d2ji2a1, d2ji2b1, d2ji2c1, d2ji2d1
        automated match to d2ji2c2
        complexed with ca, fe, fe2, no3; mutant
    3. Domains for 2ji3:
      1. 2263371Domain d2ji3a2: 2ji3 A:1-37 [138348]
        Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
        automated match to d2ji2b2
        complexed with ca, fe, no3, per; mutant
      2. 2263372Domain d2ji3b2: 2ji3 B:2-37 [138350]
        Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
        automated match to d1vzga2
        complexed with ca, fe, no3, per; mutant
      3. 2263373Domain d2ji3c2: 2ji3 C:1-37 [138352]
        Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
        automated match to d1vzga2
        complexed with ca, fe, no3, per; mutant
      4. 2263374Domain d2ji3d2: 2ji3 D:2-37 [138354]
        Other proteins in same PDB: d2ji3a1, d2ji3b1, d2ji3c1, d2ji3d1
        automated match to d1vzga2
        complexed with ca, fe, no3, per; mutant
  2. 2263375Escherichia coli [TaxId:83333] [275195] (1 PDB entry)
  3. 2263377Pyrococcus furiosus [TaxId:2261] [232944] (4 PDB entries)
    1. Domains for 3mps:
      1. 2263390Domain d3mpsa2: 3mps A:135-171 [232945]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d1nnqa2
        complexed with fe, feo, peo
      2. 2263391Domain d3mpsb2: 3mps B:135-171 [232947]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d1nnqa2
        complexed with fe, feo, peo
      3. 2263392Domain d3mpsd2: 3mps D:135-171 [239477]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d3mpsa2
        complexed with fe, feo, peo
      4. 2263393Domain d3mpsf2: 3mps F:135-171 [239479]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d3mpsa2
        complexed with fe, feo, peo
      5. 2263394Domain d3mpsg2: 3mps G:135-171 [239481]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d3mpsa2
        complexed with fe, feo, peo
      6. 2263395Domain d3mpsh2: 3mps H:135-171 [239483]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d3mpsa2
        complexed with fe, feo, peo
      7. 2263396Domain d3mpsi2: 3mps I:135-171 [239485]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d3mpsa2
        complexed with fe, feo, peo
      8. 2263397Domain d3mpsk2: 3mps K:135-171 [239487]
        Other proteins in same PDB: d3mpsa1, d3mpsb1, d3mpsd1, d3mpsf1, d3mpsg1, d3mpsh1, d3mpsi1, d3mpsk1
        automated match to d3mpsa2
        complexed with fe, feo, peo
    2. Domains for 3pwf:
      1. 2263378Domain d3pwfa2: 3pwf A:135-171 [248702]
        Other proteins in same PDB: d3pwfa1, d3pwfb1
        automated match to d3mpsa2
        complexed with fe2
      2. 2263379Domain d3pwfb2: 3pwf B:135-171 [248704]
        Other proteins in same PDB: d3pwfa1, d3pwfb1
        automated match to d3mpsa2
        complexed with fe2
    3. Domains for 3pza:
      1. 2263380Domain d3pzaa2: 3pza A:135-171 [248732]
        Other proteins in same PDB: d3pzaa1, d3pzab1
        automated match to d3mpsa2
        complexed with fe2, peo
      2. 2263381Domain d3pzab2: 3pza B:135-171 [248734]
        Other proteins in same PDB: d3pzaa1, d3pzab1
        automated match to d3mpsa2
        complexed with fe2, peo
    4. Domains for 3qvd:
      1. 2263382Domain d3qvda2: 3qvd A:135-171 [249002]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      2. 2263383Domain d3qvdb2: 3qvd B:135-171 [249004]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      3. 2263384Domain d3qvdc2: 3qvd C:135-171 [249006]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      4. 2263385Domain d3qvdd2: 3qvd D:135-171 [249008]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      5. 2263386Domain d3qvde2: 3qvd E:135-171 [249010]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      6. 2263387Domain d3qvdf2: 3qvd F:135-171 [249012]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      7. 2263388Domain d3qvdg2: 3qvd G:135-171 [249014]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo
      8. 2263389Domain d3qvdh2: 3qvd H:135-171 [249016]
        Other proteins in same PDB: d3qvda1, d3qvdb1, d3qvdc1, d3qvdd1, d3qvde1, d3qvdf1, d3qvdg1, d3qvdh1
        automated match to d3mpsa2
        complexed with fe, fe2, peo

More info for Protein automated matches from g.41.5.0: automated matches

Timeline for Protein automated matches from g.41.5.0: automated matches: