Lineage for d3knub1 (3knu B:1-211)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2150174Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2150175Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2150317Family c.116.1.0: automated matches [191557] (1 protein)
    not a true family
  6. 2150318Protein automated matches [190961] (16 species)
    not a true protein
  7. 2150319Species Anaplasma phagocytophilum [TaxId:212042] [232723] (2 PDB entries)
  8. 2150321Domain d3knub1: 3knu B:1-211 [232725]
    Other proteins in same PDB: d3knua2, d3knub2, d3knuc2
    automated match to d3quva_

Details for d3knub1

PDB Entry: 3knu (more details), 2.25 Å

PDB Description: crystal structure of trna (guanine-n1)-methyltransferase from anaplasma phagocytophilum
PDB Compounds: (B:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d3knub1:

Sequence, based on SEQRES records: (download)

>d3knub1 c.116.1.0 (B:1-211) automated matches {Anaplasma phagocytophilum [TaxId: 212042]}
mifnvltifpqmfpgplgvsnlgsalkkglwtlnvfdirafannkhntvddtpygggpgm
llradvlgrcidevlslhpntklmftsprgvsftqdiarqtmnfdnitllcgrfegider
vvdfyklqevsigdyvlsggelaamviidtcvrmvpgvignaeslkqesmegsleypqyt
rpaswkgmevpevlltgnhgeiekwrrnasl

Sequence, based on observed residues (ATOM records): (download)

>d3knub1 c.116.1.0 (B:1-211) automated matches {Anaplasma phagocytophilum [TaxId: 212042]}
mifnvltifpqmfpgplgvsnlgsalkkglwtlnvfdirafannkhntvddtpygggpgm
llradvlgrcidevlslhpntklmftsprgvsftqdiarqtmnfdnitllcgrfegider
vvdfyklqevsigdyvlsggelaamviidtcvrmvpgvieypqytrpaswkgmevpevll
tgnhgeiekwrrnasl

SCOPe Domain Coordinates for d3knub1:

Click to download the PDB-style file with coordinates for d3knub1.
(The format of our PDB-style files is described here.)

Timeline for d3knub1: