Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2581248Class g: Small proteins [56992] (98 folds)
  3. 2581531Fold g.3: Knottins (small inhibitors, toxins, lectins) [57015] (19 superfamilies)
    disulfide-bound fold; contains beta-hairpin with two adjacent disulfides
  4. 2582446Superfamily g.3.9: Growth factor receptor domain [57184] (2 families) (S)
  5. 2582517Family g.3.9.0: automated matches [232406] (1 protein)
    not a true family
  6. 2582518Protein automated matches [232407] (3 species)
    not a true protein

Species:

  1. 2582519Human (Homo sapiens) [TaxId:9606] [232408] (16 PDB entries)
    1. Domains for 2hr7:
      1. 2582520Domain d2hr7a2: 2hr7 A:157-311 [242061]
        Other proteins in same PDB: d2hr7a1, d2hr7a3, d2hr7b1, d2hr7b3
        automated match to d2dtge6
        complexed with gol, nag, p33, so4
      2. 2582521Domain d2hr7b2: 2hr7 B:157-311 [242064]
        Other proteins in same PDB: d2hr7a1, d2hr7a3, d2hr7b1, d2hr7b3
        automated match to d2dtge6
        complexed with gol, nag, p33, so4
    2. Domains for 3b2u:
      1. 2582535Domain d3b2ua2: 3b2u A:481-502 [154771]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      2. 2582536Domain d3b2ub2: 3b2u B:481-502 [154773]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      3. 2582537Domain d3b2ue2: 3b2u E:481-502 [154777]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      4. 2582538Domain d3b2ui2: 3b2u I:481-502 [154783]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      5. 2582539Domain d3b2um2: 3b2u M:481-502 [154787]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      6. 2582540Domain d3b2up2: 3b2u P:481-502 [154791]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      7. 2582541Domain d3b2us2: 3b2u S:481-502 [154795]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
      8. 2582542Domain d3b2uv2: 3b2u V:481-502 [154799]
        Other proteins in same PDB: d3b2ua1, d3b2ua3, d3b2ub1, d3b2ub3, d3b2uc1, d3b2uc2, d3b2uc3, d3b2ud1, d3b2ud2, d3b2ue1, d3b2ue3, d3b2uf1, d3b2uf2, d3b2uf3, d3b2ug1, d3b2ug2, d3b2uh1, d3b2uh2, d3b2uh3, d3b2ui1, d3b2ui3, d3b2uj1, d3b2uj2, d3b2uj3, d3b2uk1, d3b2uk2, d3b2ul1, d3b2ul2, d3b2um1, d3b2um3, d3b2un1, d3b2un2, d3b2un3, d3b2uo1, d3b2uo2, d3b2up1, d3b2up3, d3b2uq1, d3b2uq2, d3b2uq3, d3b2ur1, d3b2ur2, d3b2us1, d3b2us3, d3b2ut1, d3b2ut2, d3b2ut3, d3b2uu1, d3b2uu2, d3b2uv1, d3b2uv3, d3b2uw1, d3b2uw2, d3b2uw3, d3b2ux1, d3b2ux2
        automated match to d4krla2
        complexed with bma, man, nag, so4
    3. Domains for 3be1:
      1. 2582548Domain d3be1a2: 3be1 A:165-321 [239158]
        Other proteins in same PDB: d3be1a1, d3be1a3, d3be1l1, d3be1l2
        automated match to d1n8yc3
        complexed with mes, nag
      2. 2582549Domain d3be1a4: 3be1 A:488-607 [239160]
        Other proteins in same PDB: d3be1a1, d3be1a3, d3be1l1, d3be1l2
        automated match to d1n8yc4
        complexed with mes, nag
    4. Domains for 3h3b:
      1. 2582522Domain d3h3ba2: 3h3b A:166-192 [232414]
        Other proteins in same PDB: d3h3ba1, d3h3ba3, d3h3bb1, d3h3bb3, d3h3bc1, d3h3bc2, d3h3bd1, d3h3bd2
        automated match to d1n8zc3
      2. 2582523Domain d3h3bb2: 3h3b B:166-191 [232410]
        Other proteins in same PDB: d3h3ba1, d3h3ba3, d3h3bb1, d3h3bb3, d3h3bc1, d3h3bc2, d3h3bd1, d3h3bd2
        automated match to d1n8zc3
    5. Domain for 3u7u:
    6. Domain for 4krl:
    7. Domains for 4krm:
      1. 2582524Domain d4krma2: 4krm A:481-503 [240445]
        Other proteins in same PDB: d4krma1, d4krma3, d4krmb_, d4krmc1, d4krmc3, d4krmd_, d4krme1, d4krme3, d4krmf_, d4krmg1, d4krmg2, d4krmh_, d4krmi1, d4krmi3, d4krmj_, d4krmk1, d4krmk3, d4krml_
        automated match to d4krla2
        complexed with nag
      2. 2582525Domain d4krmc2: 4krm C:481-503 [240447]
        Other proteins in same PDB: d4krma1, d4krma3, d4krmb_, d4krmc1, d4krmc3, d4krmd_, d4krme1, d4krme3, d4krmf_, d4krmg1, d4krmg2, d4krmh_, d4krmi1, d4krmi3, d4krmj_, d4krmk1, d4krmk3, d4krml_
        automated match to d4krla2
        complexed with nag
      3. 2582526Domain d4krme2: 4krm E:481-503 [240449]
        Other proteins in same PDB: d4krma1, d4krma3, d4krmb_, d4krmc1, d4krmc3, d4krmd_, d4krme1, d4krme3, d4krmf_, d4krmg1, d4krmg2, d4krmh_, d4krmi1, d4krmi3, d4krmj_, d4krmk1, d4krmk3, d4krml_
        automated match to d4krla2
        complexed with nag
      4. 2582527Domain d4krmi2: 4krm I:481-501 [240452]
        Other proteins in same PDB: d4krma1, d4krma3, d4krmb_, d4krmc1, d4krmc3, d4krmd_, d4krme1, d4krme3, d4krmf_, d4krmg1, d4krmg2, d4krmh_, d4krmi1, d4krmi3, d4krmj_, d4krmk1, d4krmk3, d4krml_
        automated match to d4krla2
        complexed with nag
      5. 2582528Domain d4krmk2: 4krm K:481-502 [240454]
        Other proteins in same PDB: d4krma1, d4krma3, d4krmb_, d4krmc1, d4krmc3, d4krmd_, d4krme1, d4krme3, d4krmf_, d4krmg1, d4krmg2, d4krmh_, d4krmi1, d4krmi3, d4krmj_, d4krmk1, d4krmk3, d4krml_
        automated match to d4krla2
        complexed with nag
    8. Domains for 4ufr:
      1. 2582530Domain d4ufrb_: 4ufr B: [345453]
        automated match to d4cdke_
        complexed with cl, nag
      2. 2582531Domain d4ufrd_: 4ufr D: [345454]
        automated match to d4cdke_
        complexed with cl, nag
    9. Domain for 5my6:
    10. Domain for 5o4g:
    11. Domains for 5sx4:
      1. 2582546Domain d5sx4m2: 5sx4 M:481-501 [323815]
        Other proteins in same PDB: d5sx4i1, d5sx4i2, d5sx4l1, d5sx4l2, d5sx4m1, d5sx4m3, d5sx4n1, d5sx4n3
        automated match to d3p0ya2
        complexed with 1pe, edo, gol, so4
      2. 2582547Domain d5sx4n2: 5sx4 N:481-501 [323726]
        Other proteins in same PDB: d5sx4i1, d5sx4i2, d5sx4l1, d5sx4l2, d5sx4m1, d5sx4m3, d5sx4n1, d5sx4n3
        automated match to d3p0ya2
        complexed with 1pe, edo, gol, so4
    12. Domains for 5sx5:
      1. 2582533Domain d5sx5m2: 5sx5 M:481-501 [323776]
        Other proteins in same PDB: d5sx5k1, d5sx5k2, d5sx5l1, d5sx5l2, d5sx5m1, d5sx5m3, d5sx5m4, d5sx5n1, d5sx5n3
        automated match to d3p0ya2
        complexed with 1pe, edo, gol, so4; mutant
      2. 2582534Domain d5sx5n2: 5sx5 N:481-501 [323797]
        Other proteins in same PDB: d5sx5k1, d5sx5k2, d5sx5l1, d5sx5l2, d5sx5m1, d5sx5m3, d5sx5m4, d5sx5n1, d5sx5n3
        automated match to d3p0ya2
        complexed with 1pe, edo, gol, so4; mutant
    13. Domain for 5u8r:
    14. Domains for 6b3s:
      1. 2582543Domain d6b3sb2: 6b3s B:481-502 [342233]
        Other proteins in same PDB: d6b3sa1, d6b3sa2, d6b3sb1, d6b3sb3, d6b3sd1, d6b3sd2, d6b3se1, d6b3se3, d6b3sg1, d6b3sg2, d6b3si1, d6b3si3, d6b3sk1, d6b3sk2, d6b3sl1, d6b3sl2
        automated match to d1yy9a4
        complexed with bma, man, nag
      2. 2582544Domain d6b3se2: 6b3s E:481-502 [342393]
        Other proteins in same PDB: d6b3sa1, d6b3sa2, d6b3sb1, d6b3sb3, d6b3sd1, d6b3sd2, d6b3se1, d6b3se3, d6b3sg1, d6b3sg2, d6b3si1, d6b3si3, d6b3sk1, d6b3sk2, d6b3sl1, d6b3sl2
        automated match to d1yy9a4
        complexed with bma, man, nag
      3. 2582545Domain d6b3si2: 6b3s I:481-502 [342232]
        Other proteins in same PDB: d6b3sa1, d6b3sa2, d6b3sb1, d6b3sb3, d6b3sd1, d6b3sd2, d6b3se1, d6b3se3, d6b3sg1, d6b3sg2, d6b3si1, d6b3si3, d6b3sk1, d6b3sk2, d6b3sl1, d6b3sl2
        automated match to d1yy9a4
        complexed with bma, man, nag
    15. Domains for 6bgt:
      1. 3059436Domain d6bgtc2: 6bgt C:166-322 [359498]
        Other proteins in same PDB: d6bgta1, d6bgta2, d6bgtc1, d6bgtc3
        automated match to d1n8zc3
        complexed with nag; mutant
      2. 3059442Domain d6bgtc4: 6bgt C:489-607 [359504]
        Other proteins in same PDB: d6bgta1, d6bgta2, d6bgtc1, d6bgtc3
        automated match to d1n8zc4
        complexed with nag; mutant
    16. Domains for 6j71:
      1. 3065339Domain d6j71a2: 6j71 A:188-344 [365401]
        Other proteins in same PDB: d6j71a1, d6j71a3, d6j71b1, d6j71b2
        automated match to d1n8zc3
        complexed with bma, nag
      2. 3065341Domain d6j71a4: 6j71 A:511-639 [365403]
        Other proteins in same PDB: d6j71a1, d6j71a3, d6j71b1, d6j71b2
        automated match to d1n8zc4
        complexed with bma, nag
  2. 2582551Mouse (Mus musculus) [TaxId:10090] [346431] (1 PDB entry)
  3. 2582554Xenopus (Silurana) tropicalis [TaxId:8364] [311364] (7 PDB entries)
    1. Domains for 4c8v:
      1. 2582557Domain d4c8va1: 4c8v A:36-144 [345110]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      2. 2582558Domain d4c8vb1: 4c8v B:39-144 [345112]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      3. 2582559Domain d4c8vc1: 4c8v C:38-144 [345114]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      4. 2582560Domain d4c8vd1: 4c8v D:40-144 [345116]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      5. 2582561Domain d4c8ve_: 4c8v E: [345118]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      6. 2582562Domain d4c8vf_: 4c8v F: [345119]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      7. 2582563Domain d4c8vg_: 4c8v G: [345120]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
      8. 2582564Domain d4c8vh_: 4c8v H: [345121]
        Other proteins in same PDB: d4c8va2, d4c8vb2, d4c8vc2, d4c8vd2
        automated match to d4cdke_
    2. Domains for 4c8w:
      1. 2582569Domain d4c8wi_: 4c8w I: [345122]
        automated match to d4cdke_
      2. 2582570Domain d4c8wj_: 4c8w J: [345123]
        automated match to d4cdke_
    3. Domains for 4c9a:
      1. 2582565Domain d4c9ab_: 4c9a B: [345126]
        automated match to d4cdke_
      2. 2582566Domain d4c9ad_: 4c9a D: [345127]
        automated match to d4cdke_
    4. Domains for 4c9e:
      1. 2582571Domain d4c9eb_: 4c9e B: [345128]
        automated match to d4cdke_
      2. 2582572Domain d4c9ed_: 4c9e D: [345129]
        automated match to d4cdke_
      3. 2582573Domain d4c9ef_: 4c9e F: [345130]
        automated match to d4cdke_
      4. 2582574Domain d4c9eh_: 4c9e H: [345131]
        automated match to d4cdke_
    5. Domains for 4c9r:
      1. 2582555Domain d4c9rb_: 4c9r B: [345132]
        Other proteins in same PDB: d4c9rd2
        automated match to d4cdke_
      2. 2582556Domain d4c9rd1: 4c9r D:39-144 [345133]
        Other proteins in same PDB: d4c9rd2
        automated match to d4cdke_
    6. Domains for 4c9u:
      1. 2582567Domain d4c9ub_: 4c9u B: [343942]
        automated match to d4cdke_
      2. 2582568Domain d4c9ud_: 4c9u D: [307106]
        automated match to d4bspa_
    7. Domain for 4c9v:

More info for Protein automated matches from g.3.9.0: automated matches

Timeline for Protein automated matches from g.3.9.0: automated matches: