Lineage for Species: Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId: 11698]

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1991985Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 1992228Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families) (S)
  5. 1992302Family a.28.3.0: automated matches [191629] (1 protein)
    not a true family
  6. 1992303Protein automated matches [191156] (10 species)
    not a true protein
  7. 1992324Species Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] [232387] (4 PDB entries)

PDB entries in Species: Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId: 11698]:

  1. Domain(s) for 3h47:
  2. Domain(s) for 3h4e:
    1. 1992327Domain d3h4ea2: 3h4e A:148-220 [232400]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    2. 1992328Domain d3h4eb2: 3h4e B:148-219 [232394]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    3. 1992329Domain d3h4ec2: 3h4e C:148-219 [232403]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    4. 1992330Domain d3h4ed2: 3h4e D:148-219 [232398]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    5. 1992331Domain d3h4ee2: 3h4e E:148-219 [232391]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    6. 1992332Domain d3h4ef2: 3h4e F:148-219 [232402]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    7. 1992333Domain d3h4eg2: 3h4e G:148-220 [232401]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    8. 1992334Domain d3h4eh2: 3h4e H:148-219 [232397]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    9. 1992335Domain d3h4ei2: 3h4e I:148-219 [232396]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    10. 1992336Domain d3h4ej2: 3h4e J:148-219 [232393]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d1e6jp1
    11. 1992337Domain d3h4ek2: 3h4e K:148-219 [239334]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d3h47a2
    12. 1992338Domain d3h4el2: 3h4e L:148-219 [239336]
      Other proteins in same PDB: d3h4ea1, d3h4eb1, d3h4ec1, d3h4ed1, d3h4ee1, d3h4ef1, d3h4eg1, d3h4eh1, d3h4ei1, d3h4ej1, d3h4ek1, d3h4el1
      automated match to d3h47a2
  3. Domain(s) for 4qnb:
  4. Domain(s) for 5jpa:

More info for Species Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] from a.28.3.0 automated matches

Timeline for Species Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId:11698] from a.28.3.0 automated matches: