Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2528291Fold d.87: CO dehydrogenase flavoprotein C-domain-like [55423] (2 superfamilies)
    core: beta(3,4)-alpha(3); alpha+beta sandwich
  4. 2528454Superfamily d.87.2: CO dehydrogenase flavoprotein C-terminal domain-like [55447] (2 families) (S)
    automatically mapped to Pfam PF03450
  5. 2528514Family d.87.2.0: automated matches [232089] (1 protein)
    not a true family
  6. 2528515Protein automated matches [232090] (5 species)
    not a true protein

Species:

  1. 2528516Cow (Bos taurus) [TaxId:9913] [232091] (11 PDB entries)
    1. Domains for 3b9j:
      1. 2528531Domain d3b9jb1: 3b9j B:415-528 [155002]
        Other proteins in same PDB: d3b9ja1, d3b9ja2, d3b9jb2, d3b9jc1, d3b9jc2, d3b9ji1, d3b9ji2, d3b9jj2, d3b9jk1, d3b9jk2
        automated match to d1v97a4
        complexed with 290, ca, fad, fes, mos, mte
      2. 2528532Domain d3b9jj1: 3b9j J:415-528 [155008]
        Other proteins in same PDB: d3b9ja1, d3b9ja2, d3b9jb2, d3b9jc1, d3b9jc2, d3b9ji1, d3b9ji2, d3b9jj2, d3b9jk1, d3b9jk2
        automated match to d1v97a4
        complexed with 290, ca, fad, fes, mos, mte
    2. Domains for 3etr:
      1. 2528535Domain d3etrb2: 3etr B:415-528 [232100]
        Other proteins in same PDB: d3etra1, d3etra2, d3etrb1, d3etrc1, d3etrc2, d3etrl1, d3etrl2, d3etrm1, d3etrn1, d3etrn2
        automated match to d1v97a4
        complexed with ca, fad, fes, luz, mos, mte
      2. 2528536Domain d3etrm2: 3etr M:415-528 [232093]
        Other proteins in same PDB: d3etra1, d3etra2, d3etrb1, d3etrc1, d3etrc2, d3etrl1, d3etrl2, d3etrm1, d3etrn1, d3etrn2
        automated match to d1v97a4
        complexed with ca, fad, fes, luz, mos, mte
    3. Domains for 3eub:
      1. 2528537Domain d3eub32: 3eub 3:415-528 [232092]
        Other proteins in same PDB: d3eub21, d3eub22, d3eub31, d3eub41, d3eub42, d3euba1, d3euba2, d3eubb1, d3eubc1, d3eubc2, d3eubj1, d3eubj2, d3eubk1, d3eubl1, d3eubl2, d3eubs1, d3eubs2, d3eubt1, d3eubu1, d3eubu2
        automated match to d1v97a4
        complexed with fad, fes, mom, mte, xan
      2. 2528538Domain d3eubb2: 3eub B:415-527 [232095]
        Other proteins in same PDB: d3eub21, d3eub22, d3eub31, d3eub41, d3eub42, d3euba1, d3euba2, d3eubb1, d3eubc1, d3eubc2, d3eubj1, d3eubj2, d3eubk1, d3eubl1, d3eubl2, d3eubs1, d3eubs2, d3eubt1, d3eubu1, d3eubu2
        automated match to d1v97a4
        complexed with fad, fes, mom, mte, xan
      3. 2528539Domain d3eubk2: 3eub K:415-527 [239255]
        Other proteins in same PDB: d3eub21, d3eub22, d3eub31, d3eub41, d3eub42, d3euba1, d3euba2, d3eubb1, d3eubc1, d3eubc2, d3eubj1, d3eubj2, d3eubk1, d3eubl1, d3eubl2, d3eubs1, d3eubs2, d3eubt1, d3eubu1, d3eubu2
        automated match to d3eub32
        complexed with fad, fes, mom, mte, xan
      4. 2528540Domain d3eubt2: 3eub T:415-528 [239261]
        Other proteins in same PDB: d3eub21, d3eub22, d3eub31, d3eub41, d3eub42, d3euba1, d3euba2, d3eubb1, d3eubc1, d3eubc2, d3eubj1, d3eubj2, d3eubk1, d3eubl1, d3eubl2, d3eubs1, d3eubs2, d3eubt1, d3eubu1, d3eubu2
        automated match to d3eub32
        complexed with fad, fes, mom, mte, xan
    4. Domains for 3nrz:
      1. 2528521Domain d3nrzb2: 3nrz B:415-528 [239502]
        Other proteins in same PDB: d3nrza1, d3nrza2, d3nrzb1, d3nrzc1, d3nrzc2, d3nrzj1, d3nrzj2, d3nrzk1, d3nrzl1, d3nrzl2
        automated match to d3eub32
        complexed with fad, fes, hpa, mos, mte
      2. 2528522Domain d3nrzk2: 3nrz K:415-528 [239506]
        Other proteins in same PDB: d3nrza1, d3nrza2, d3nrzb1, d3nrzc1, d3nrzc2, d3nrzj1, d3nrzj2, d3nrzk1, d3nrzl1, d3nrzl2
        automated match to d3eub32
        complexed with fad, fes, hpa, mos, mte
    5. Domains for 3ns1:
      1. 2528533Domain d3ns1b2: 3ns1 B:415-528 [248004]
        Other proteins in same PDB: d3ns1a1, d3ns1a2, d3ns1b1, d3ns1c1, d3ns1c2, d3ns1j1, d3ns1j2, d3ns1k1, d3ns1l1, d3ns1l2
        automated match to d3eub32
        complexed with fad, fes, mos, mte, pm6
      2. 2528534Domain d3ns1k2: 3ns1 K:415-528 [248010]
        Other proteins in same PDB: d3ns1a1, d3ns1a2, d3ns1b1, d3ns1c1, d3ns1c2, d3ns1j1, d3ns1j2, d3ns1k1, d3ns1l1, d3ns1l2
        automated match to d3eub32
        complexed with fad, fes, mos, mte, pm6
    6. Domains for 3nvv:
      1. 2528519Domain d3nvvb2: 3nvv B:415-528 [233054]
        Other proteins in same PDB: d3nvva1, d3nvva2, d3nvvb1, d3nvvc1, d3nvvc2, d3nvvj1, d3nvvj2, d3nvvk1, d3nvvl1, d3nvvl2
        automated match to d1fo4a4
        complexed with ast, fad, fes, mos, mte
      2. 2528520Domain d3nvvk2: 3nvv K:415-528 [239514]
        Other proteins in same PDB: d3nvva1, d3nvva2, d3nvvb1, d3nvvc1, d3nvvc2, d3nvvj1, d3nvvj2, d3nvvk1, d3nvvl1, d3nvvl2
        automated match to d3nvvb2
        complexed with ast, fad, fes, mos, mte
    7. Domains for 3nvw:
      1. 2528517Domain d3nvwb2: 3nvw B:415-528 [248044]
        Other proteins in same PDB: d3nvwa1, d3nvwa2, d3nvwb1, d3nvwc1, d3nvwc2, d3nvwj1, d3nvwj2, d3nvwk1, d3nvwl1, d3nvwl2
        automated match to d3nvvb2
        complexed with fad, fes, gun, mos, mte
      2. 2528518Domain d3nvwk2: 3nvw K:415-528 [248050]
        Other proteins in same PDB: d3nvwa1, d3nvwa2, d3nvwb1, d3nvwc1, d3nvwc2, d3nvwj1, d3nvwj2, d3nvwk1, d3nvwl1, d3nvwl2
        automated match to d3nvvb2
        complexed with fad, fes, gun, mos, mte
    8. Domains for 3nvy:
      1. 2528529Domain d3nvyb2: 3nvy B:415-528 [248056]
        Other proteins in same PDB: d3nvya1, d3nvya2, d3nvyb1, d3nvyc1, d3nvyc2, d3nvyj1, d3nvyj2, d3nvyk1, d3nvyl1, d3nvyl2
        automated match to d3nvvb2
        complexed with fad, fes, mos, mte, que
      2. 2528530Domain d3nvyk2: 3nvy K:415-528 [248062]
        Other proteins in same PDB: d3nvya1, d3nvya2, d3nvyb1, d3nvyc1, d3nvyc2, d3nvyj1, d3nvyj2, d3nvyk1, d3nvyl1, d3nvyl2
        automated match to d3nvvb2
        complexed with fad, fes, mos, mte, que
    9. Domains for 3nvz:
      1. 2528523Domain d3nvzb2: 3nvz B:415-528 [248068]
        Other proteins in same PDB: d3nvza1, d3nvza2, d3nvzb1, d3nvzc1, d3nvzc2, d3nvzj1, d3nvzj2, d3nvzk1, d3nvzl1, d3nvzl2
        automated match to d3eub32
        complexed with fad, fes, i3a, mos, mte
      2. 2528524Domain d3nvzk2: 3nvz K:415-528 [248074]
        Other proteins in same PDB: d3nvza1, d3nvza2, d3nvzb1, d3nvzc1, d3nvzc2, d3nvzj1, d3nvzj2, d3nvzk1, d3nvzl1, d3nvzl2
        automated match to d3eub32
        complexed with fad, fes, i3a, mos, mte
    10. Domains for 3rca:
      1. 2528527Domain d3rcab2: 3rca B:415-528 [306433]
        Other proteins in same PDB: d3rcaa1, d3rcaa2, d3rcab1, d3rcac1, d3rcac2, d3rcaj1, d3rcaj2, d3rcak1, d3rcal1, d3rcal2
        automated match to d1v97a4
        complexed with fad, fes, mte, rmo
      2. 2528528Domain d3rcak2: 3rca K:415-528 [306439]
        Other proteins in same PDB: d3rcaa1, d3rcaa2, d3rcab1, d3rcac1, d3rcac2, d3rcaj1, d3rcaj2, d3rcak1, d3rcal1, d3rcal2
        automated match to d1v97a4
        complexed with fad, fes, mte, rmo
    11. Domains for 3sr6:
      1. 2528525Domain d3sr6b2: 3sr6 B:415-528 [239754]
        Other proteins in same PDB: d3sr6a1, d3sr6a2, d3sr6b1, d3sr6c1, d3sr6c2, d3sr6j1, d3sr6j2, d3sr6k1, d3sr6l1, d3sr6l2
        automated match to d3eub32
        complexed with fad, fes, mte, rmo
      2. 2528526Domain d3sr6k2: 3sr6 K:415-528 [239758]
        Other proteins in same PDB: d3sr6a1, d3sr6a2, d3sr6b1, d3sr6c1, d3sr6c2, d3sr6j1, d3sr6j2, d3sr6k1, d3sr6l1, d3sr6l2
        automated match to d3eub32
        complexed with fad, fes, mte, rmo
  2. Oligotropha carboxidovorans [TaxId:504832] [346370] (1 PDB entry)
  3. 2528544Pseudomonas carboxydovorans [311168] (1 PDB entry)
  4. 2528547Rhodobacter capsulatus [TaxId:1061] [255638] (2 PDB entries)
    1. Domains for 2w3r:
      1. 2528552Domain d2w3ra4: 2w3r A:346-462 [238899]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra3, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc3, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re3, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg3, d2w3rh1, d2w3rh2
        automated match to d1jroa3
        complexed with ca, fad, fes, hpa, mom, mte
      2. 2528553Domain d2w3rc4: 2w3r C:346-462 [238903]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra3, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc3, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re3, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg3, d2w3rh1, d2w3rh2
        automated match to d1jroa3
        complexed with ca, fad, fes, hpa, mom, mte
      3. 2528554Domain d2w3re4: 2w3r E:346-462 [238907]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra3, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc3, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re3, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg3, d2w3rh1, d2w3rh2
        automated match to d1jroa3
        complexed with ca, fad, fes, hpa, mom, mte
      4. 2528555Domain d2w3rg4: 2w3r G:346-462 [238911]
        Other proteins in same PDB: d2w3ra1, d2w3ra2, d2w3ra3, d2w3rb1, d2w3rb2, d2w3rc1, d2w3rc2, d2w3rc3, d2w3rd1, d2w3rd2, d2w3re1, d2w3re2, d2w3re3, d2w3rf1, d2w3rf2, d2w3rg1, d2w3rg2, d2w3rg3, d2w3rh1, d2w3rh2
        automated match to d1jroa3
        complexed with ca, fad, fes, hpa, mom, mte
    2. Domains for 2w3s:
      1. 2528548Domain d2w3sa4: 2w3s A:346-462 [238915]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa3, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc3, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se3, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg3, d2w3sh1, d2w3sh2
        automated match to d1jroa3
        complexed with ca, fad, fes, mom, mte, xan
      2. 2528549Domain d2w3sc4: 2w3s C:346-462 [238919]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa3, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc3, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se3, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg3, d2w3sh1, d2w3sh2
        automated match to d1jroa3
        complexed with ca, fad, fes, mom, mte, xan
      3. 2528550Domain d2w3se4: 2w3s E:346-462 [238923]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa3, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc3, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se3, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg3, d2w3sh1, d2w3sh2
        automated match to d1jroa3
        complexed with ca, fad, fes, mom, mte, xan
      4. 2528551Domain d2w3sg4: 2w3s G:346-462 [238927]
        Other proteins in same PDB: d2w3sa1, d2w3sa2, d2w3sa3, d2w3sb1, d2w3sb2, d2w3sc1, d2w3sc2, d2w3sc3, d2w3sd1, d2w3sd2, d2w3se1, d2w3se2, d2w3se3, d2w3sf1, d2w3sf2, d2w3sg1, d2w3sg2, d2w3sg3, d2w3sh1, d2w3sh2
        automated match to d1jroa3
        complexed with ca, fad, fes, mom, mte, xan
  5. 2528556Sulfolobus tokodaii [TaxId:273063] [312397] (1 PDB entry)

More info for Protein automated matches from d.87.2.0: automated matches

Timeline for Protein automated matches from d.87.2.0: automated matches: