Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2564907Fold d.240: Lesion bypass DNA polymerase (Y-family), little finger domain [100878] (1 superfamily)
    beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology
  4. 2564908Superfamily d.240.1: Lesion bypass DNA polymerase (Y-family), little finger domain [100879] (2 families) (S)
  5. 2565008Family d.240.1.0: automated matches [231323] (1 protein)
    not a true family
  6. 2565009Protein automated matches [231324] (5 species)
    not a true protein

Species:

  1. 2565010Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [231491] (7 PDB entries)
    1. Domains for 2r8j:
      1. 2565016Domain d2r8ja1: 2r8j A:390-509 [151723]
        Other proteins in same PDB: d2r8ja2, d2r8ja3, d2r8jb2
        automated match to d3mfha2
        protein/DNA complex; complexed with ca, cpt, dcp
      2. 2565017Domain d2r8jb1: 2r8j B:390-509 [151725]
        Other proteins in same PDB: d2r8ja2, d2r8ja3, d2r8jb2
        automated match to d3mfha2
        protein/DNA complex; complexed with ca, cpt, dcp
    2. Domains for 2wtf:
      1. 2565014Domain d2wtfa2: 2wtf A:390-509 [231492]
        Other proteins in same PDB: d2wtfa1, d2wtfb1
        automated match to d1jiha1
        protein/DNA complex; complexed with ca, cpt, dtp
      2. 2565015Domain d2wtfb2: 2wtf B:390-508 [231494]
        Other proteins in same PDB: d2wtfa1, d2wtfb1
        automated match to d1jiha1
        protein/DNA complex; complexed with ca, cpt, dtp
    3. Domains for 2xgp:
      1. 2565018Domain d2xgpa2: 2xgp A:390-510 [244504]
        Other proteins in same PDB: d2xgpa1, d2xgpa3, d2xgpb1, d2xgpb3
        automated match to d2wtfa2
        protein/DNA complex; complexed with ca
      2. 2565019Domain d2xgpb2: 2xgp B:390-510 [244506]
        Other proteins in same PDB: d2xgpa1, d2xgpa3, d2xgpb1, d2xgpb3
        automated match to d2wtfa2
        protein/DNA complex; complexed with ca
    4. Domains for 2xgq:
      1. 2565020Domain d2xgqa2: 2xgq A:390-510 [244508]
        Other proteins in same PDB: d2xgqa1, d2xgqa3, d2xgqb1, d2xgqb3
        automated match to d2wtfa2
        protein/DNA complex; complexed with ca
      2. 2565021Domain d2xgqb2: 2xgq B:390-510 [244510]
        Other proteins in same PDB: d2xgqa1, d2xgqa3, d2xgqb1, d2xgqb3
        automated match to d2wtfa2
        protein/DNA complex; complexed with ca
    5. Domain for 3mfh:
    6. Domain for 3oha:
    7. Domain for 3ohb:
  2. 2565022Sulfolobus acidocaldarius [TaxId:2285] [236245] (1 PDB entry)
  3. Sulfolobus solfataricus [TaxId:2287] [255037] (2 PDB entries)
    1. Domains for 2atl:
      1. 2565025Domain d2atla1: 2atl A:241-341 [127296]
        Other proteins in same PDB: d2atla2, d2atla3, d2atlb2, d2atlb3
        automated match to d1jx4a1
        protein/DNA complex; complexed with ca, dcp
      2. 2565026Domain d2atlb1: 2atl B:1241-1341 [127298]
        Other proteins in same PDB: d2atla2, d2atla3, d2atlb2, d2atlb3
        automated match to d1jx4a1
        protein/DNA complex; complexed with ca, dcp
    2. Domains for 2au0:
      1. 2565027Domain d2au0a1: 2au0 A:241-341 [127318]
        Other proteins in same PDB: d2au0a2, d2au0a3, d2au0b2, d2au0b3
        automated match to d1jx4a1
        protein/DNA complex; complexed with ca
      2. 2565028Domain d2au0b1: 2au0 B:1241-1341 [127320]
        Other proteins in same PDB: d2au0a2, d2au0a3, d2au0b2, d2au0b3
        automated match to d1jx4a1
        protein/DNA complex; complexed with ca
  4. 2565029Sulfolobus solfataricus [TaxId:273057] [231327] (33 PDB entries)
    1. Domain for 2bq3:
    2. Domain for 2bqr:
    3. Domain for 2bqu:
    4. Domain for 2br0:
    5. Domain for 2c22:
    6. Domain for 2c28:
    7. Domain for 2c2d:
    8. Domain for 2c2e:
    9. Domain for 2c2r:
    10. Domain for 2j6s:
    11. Domain for 2j6t:
    12. Domain for 2j6u:
    13. Domain for 2jef:
    14. Domain for 2jeg:
    15. Domain for 2jei:
    16. Domain for 2jej:
    17. Domain for 2uvr:
    18. Domain for 2uvu:
    19. Domain for 2uvv:
    20. Domain for 2uvw:
    21. Domain for 2v4q:
    22. Domain for 2v4r:
    23. Domain for 2v4s:
    24. Domain for 2v4t:
    25. Domains for 2v9w:
      1. 2565061Domain d2v9wa1: 2v9w A:241-344 [152811]
        Other proteins in same PDB: d2v9wa2, d2v9wb2
        automated match to d1jx4a1
        protein/DNA complex; complexed with ca, dct
      2. 2565062Domain d2v9wb1: 2v9w B:241-343 [152813]
        Other proteins in same PDB: d2v9wa2, d2v9wb2
        automated match to d1jx4a1
        protein/DNA complex; complexed with ca, dct
    26. Domains for 2va2:
      1. 2565059Domain d2va2a1: 2va2 A:241-343 [152815]
        Other proteins in same PDB: d2va2a2, d2va2b2, d2va2b3
        automated match to d2v4ra2
        protein/DNA complex; complexed with ca, dct
      2. 2565060Domain d2va2b1: 2va2 B:241-343 [152817]
        Other proteins in same PDB: d2va2a2, d2va2b2, d2va2b3
        automated match to d2v4ra2
        protein/DNA complex; complexed with ca, dct
    27. Domain for 2va3:
    28. Domain for 2w8k:
    29. Domain for 2w8l:
    30. Domain for 2w9a:
    31. Domains for 2w9b:
      1. 2565049Domain d2w9ba2: 2w9b A:241-342 [231378]
        Other proteins in same PDB: d2w9ba1, d2w9bb1, d2w9bb3
        automated match to d1jx4a1
        protein/DNA complex; complexed with mg
      2. 2565050Domain d2w9bb2: 2w9b B:241-342 [238937]
        Other proteins in same PDB: d2w9ba1, d2w9bb1, d2w9bb3
        automated match to d2v4ra2
        protein/DNA complex; complexed with mg
    32. Domains for 2w9c:
      1. 2565066Domain d2w9ca2: 2w9c A:241-342 [231379]
        Other proteins in same PDB: d2w9ca1, d2w9cb1
        automated match to d1jx4a1
        protein/DNA complex; complexed with mg, ttp
      2. 2565067Domain d2w9cb2: 2w9c B:241-342 [238939]
        Other proteins in same PDB: d2w9ca1, d2w9cb1
        automated match to d2v4ra2
        protein/DNA complex; complexed with mg, ttp
    33. Domains for 2xcp:
      1. 2565043Domain d2xcpa2: 2xcp A:241-342 [244482]
        Other proteins in same PDB: d2xcpa1, d2xcpb1, d2xcpb3
        automated match to d2v4ra2
        protein/DNA complex; protein/RNA complex; complexed with dcp, mg
      2. 2565044Domain d2xcpb2: 2xcp B:241-342 [244484]
        Other proteins in same PDB: d2xcpa1, d2xcpb1, d2xcpb3
        automated match to d2v4ra2
        protein/DNA complex; protein/RNA complex; complexed with dcp, mg
  5. 3047980Saccharomyces cerevisiae [TaxId:559292] [348042] (1 PDB entry)

More info for Protein automated matches from d.240.1.0: automated matches

Timeline for Protein automated matches from d.240.1.0: automated matches: