SCOPe 2.08: Domain d2qkmd2: 2qkm D:95-233

Lineage for d2qkmd2 (2qkm D:95-233)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.113: Nudix [55810] (1 superfamily)
   beta(2)-alpha-beta(3)-alpha; 3 layers: alpha/beta/alpha; mixed sheet
   contains beta-grasp motif

4. Superfamily d.113.1: Nudix [55811] (8 families)

5. Family d.113.1.7: mRNA decapping enzyme-like [143777] (2 proteins)
   part of Pfam PF00293

6. Protein automated matches [231207] (2 species)
   not a true protein

7. Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [231208] (1 PDB entry)

8. Domain d2qkmd2: 2qkm D:95-233 [231209]
   Other proteins in same PDB: d2qkmd1, d2qkmh1
   automated match to d2a6ta2
   protein/RNA complex; complexed with atp

Details for d2qkmd2

PDB Entry: 2qkm, 2.8 Å

PDB Description: The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex

PDB Compounds: (D:) SPAC19A8.12 protein

SCOPe Domain Sequences for d2qkmd2:

Sequence, based on SEQRES records:

>d2qkmd2 d.113.1.7 (D:95-233) automated matches {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
ripvrgaimldmsmqqcvlvkgwkassgwgfpkgkidkdesdvdcairevyeetgfdcss
rinpnefidmtirgqnvrlyiipgisldtrfesrtrkeiskiewhnlmdlptfkknkpqt
mknkfymvipflaplkkwi

Sequence, based on observed residues (ATOM records):

>d2qkmd2 d.113.1.7 (D:95-233) automated matches {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
ripvrgaimldmsmqqcvlvwgfpkgkidkdesdvdcairevyeetgfdcssrinpnefi
dmtirgqnvrlyiipgisldtrfesriewhnlmdlptymvipflaplkkwi

Timeline for d2qkmd2:

• d2qkmd2 first appeared in SCOPe 2.03
  
• d2qkmd2 appears in SCOPe 2.07