SCOPe 2.03: Domain d2qkmd1: 2qkm D:1-94

Lineage for d2qkmd1 (2qkm D:1-94)

1. Root: SCOPe 2.03

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.242: Dcp2 domain-like [140585] (1 superfamily)
   4 helices; orthogonal array of two alpha hairpins

4. Superfamily a.242.1: Dcp2 domain-like [140586] (1 family)
   automatically mapped to Pfam PF05026

5. Family a.242.1.1: Dcp2 box A domain [140587] (1 protein)
   Pfam PF05026

6. Protein mRNA decapping enzyme Dcp2p, N-terminal domain [140588] (1 species)

7. Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [140589] (3 PDB entries)
   Uniprot O13828 1-94

8. Domain d2qkmd1: 2qkm D:1-94 [231206]
   Other proteins in same PDB: d2qkmd2, d2qkmh2
   automated match to d2a6ta1
   protein/RNA complex; complexed with atp

Details for d2qkmd1

PDB Entry: 2qkm, 2.8 Å

PDB Description: The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex

PDB Compounds: (D:) SPAC19A8.12 protein

SCOPe Domain Sequences for d2qkmd1:

Sequence, based on SEQRES records:

>d2qkmd1 a.242.1.1 (D:1-94) mRNA decapping enzyme Dcp2p, N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
msftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpslg
lrvfsaklfahcpllwkwskvheeafddflrykt

Sequence, based on observed residues (ATOM records):

>d2qkmd1 a.242.1.1 (D:1-94) mRNA decapping enzyme Dcp2p, N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
msftnatfsqvlddlsarfilnlpaeeqssverlcfqieqahwfyedfiraqndqlpslg
lrvfsaklfahcwkwskvheeafddflrykt

Timeline for d2qkmd1:

• d2qkmd1 is new in SCOPe 2.03-stable
  
• d2qkmd1 appears in SCOPe 2.04
  
• d2qkmd1 appears in the current release, SCOPe 2.08