SCOPe 2.07: Domain d2dtuc2: 2dtu C:376-899

Lineage for d2dtuc2 (2dtu C:376-899)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d2dtuc2: 2dtu C:376-899 [230668]
   Other proteins in same PDB: d2dtua1, d2dtub1, d2dtuc1, d2dtud1
   automated match to d1ih7a2
   protein/DNA complex

Details for d2dtuc2

PDB Entry: 2dtu, 2.37 Å

PDB Description: crystal structure of the beta hairpin loop deletion variant of rb69 gp43 in complex with dna containing an abasic site analog

PDB Compounds: (C:) DNA polymerase

SCOPe Domain Sequences for d2dtuc2:

Sequence; same for both SEQRES and ATOM records:

>d2dtuc2 e.8.1.1 (C:376-899) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfd

Timeline for d2dtuc2:

• d2dtuc2 first appeared in SCOPe 2.03
  
• d2dtuc2 appears in SCOPe 2.06
  
• d2dtuc2 appears in the current release, SCOPe 2.08