Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1996372Fold a.43: Ribbon-helix-helix [47597] (1 superfamily)
    core: 4 helices; array of 2 hairpins, opened
  4. 1996373Superfamily a.43.1: Ribbon-helix-helix [47598] (12 families) (S)
    formerly Met repressor-like; dimeric proteins; the N-termini form a small beta-sheet ribbon
  5. 1996580Family a.43.1.0: automated matches [230594] (1 protein)
    not a true family
  6. 1996581Protein automated matches [230595] (4 species)
    not a true protein

Species:

  1. 1996582Escherichia coli [TaxId:562] [254910] (1 PDB entry)
  2. 1996585Helicobacter pylori [TaxId:210] [233239] (1 PDB entry)
  3. 1996587Helicobacter pylori [TaxId:85962] [230596] (9 PDB entries)
    1. Domains for 2ca9:
      1. 1996592Domain d2ca9a1: 2ca9 A:8-60 [230607]
        Other proteins in same PDB: d2ca9a2, d2ca9b2
        automated match to d2bj9a1
        complexed with fmt, gol
      2. 1996593Domain d2ca9b1: 2ca9 B:9-60 [230606]
        Other proteins in same PDB: d2ca9a2, d2ca9b2
        automated match to d2bj9a1
        complexed with fmt, gol
    2. Domains for 2cad:
      1. 1996596Domain d2cada1: 2cad A:9-60 [230597]
        Other proteins in same PDB: d2cada2, d2cadb2
        automated match to d2bj9a1
        complexed with cit, fmt, gol, ni
      2. 1996597Domain d2cadb1: 2cad B:9-57 [230598]
        Other proteins in same PDB: d2cada2, d2cadb2
        automated match to d2bj9a1
        complexed with cit, fmt, gol, ni
    3. Domains for 2caj:
      1. 1996600Domain d2caja1: 2caj A:9-60 [230599]
        Other proteins in same PDB: d2caja2, d2cajb2
        automated match to d2bj9a1
        complexed with cl, gol, ni
      2. 1996601Domain d2cajb1: 2caj B:9-60 [230600]
        Other proteins in same PDB: d2caja2, d2cajb2
        automated match to d2bj9a1
        complexed with cl, gol, ni
    4. Domains for 2wvb:
      1. 1996590Domain d2wvba1: 2wvb A:8-60 [231503]
        Other proteins in same PDB: d2wvba2, d2wvbb2
        automated match to d2bj9a1
        complexed with fmt, gol
      2. 1996591Domain d2wvbb1: 2wvb B:9-60 [231505]
        Other proteins in same PDB: d2wvba2, d2wvbb2
        automated match to d2bj9a1
        complexed with fmt, gol
    5. Domains for 2wvc:
      1. 1996594Domain d2wvca1: 2wvc A:8-60 [231509]
        Other proteins in same PDB: d2wvca2, d2wvcb2
        automated match to d2bj9a1
        complexed with fmt, gol, so4
      2. 1996595Domain d2wvcb1: 2wvc B:9-60 [231507]
        Other proteins in same PDB: d2wvca2, d2wvcb2
        automated match to d2bj9a1
        complexed with fmt, gol, so4
    6. Domains for 2wvd:
      1. 1996602Domain d2wvda1: 2wvd A:6-60 [231510]
        Other proteins in same PDB: d2wvda2, d2wvdb2, d2wvdc2, d2wvdd2
        automated match to d2bj9a1
        complexed with gol, so4
      2. 1996603Domain d2wvdb1: 2wvd B:9-60 [231513]
        Other proteins in same PDB: d2wvda2, d2wvdb2, d2wvdc2, d2wvdd2
        automated match to d2bj9a1
        complexed with gol, so4
      3. 1996604Domain d2wvdc1: 2wvd C:8-60 [238979]
        Other proteins in same PDB: d2wvda2, d2wvdb2, d2wvdc2, d2wvdd2
        automated match to d2wvdb1
        complexed with gol, so4
      4. 1996605Domain d2wvdd1: 2wvd D:8-60 [238981]
        Other proteins in same PDB: d2wvda2, d2wvdb2, d2wvdc2, d2wvdd2
        automated match to d2wvdb1
        complexed with gol, so4
    7. Domains for 2wve:
      1. 1996598Domain d2wvea1: 2wve A:9-60 [231515]
        Other proteins in same PDB: d2wvea2, d2wveb2
        automated match to d2bj9a1
        complexed with cit, gol, so4, trs
      2. 1996599Domain d2wveb1: 2wve B:9-60 [231517]
        Other proteins in same PDB: d2wvea2, d2wveb2
        automated match to d2bj9a1
        complexed with cit, gol, so4, trs
    8. Domains for 2wvf:
      1. 1996588Domain d2wvfa1: 2wvf A:9-60 [244309]
        Other proteins in same PDB: d2wvfa2, d2wvfb2
        automated match to d2wvcb1
        complexed with fmt, gol, ni, so4
      2. 1996589Domain d2wvfb1: 2wvf B:9-60 [244311]
        Other proteins in same PDB: d2wvfa2, d2wvfb2
        automated match to d2wvcb1
        complexed with fmt, gol, ni, so4
    9. Domains for 3lgh:
      1. 1996606Domain d3lgha1: 3lgh A:10-59 [247456]
        Other proteins in same PDB: d3lgha2, d3lghb2, d3lghc_, d3lghd_
        automated match to d2cada1
        complexed with mg, ni
      2. 1996607Domain d3lghb1: 3lgh B:9-60 [247458]
        Other proteins in same PDB: d3lgha2, d3lghb2, d3lghc_, d3lghd_
        automated match to d2cajb1
        complexed with mg, ni
  4. Pyrococcus horikoshii OT3 [TaxId:70601] [255054] (2 PDB entries)
    1. Domain for 2bj1:
    2. Domains for 2bj9:
      1. 1996609Domain d2bj9a1: 2bj9 A:1-50 [128616]
        Other proteins in same PDB: d2bj9a2, d2bj9b2
        automated match to d2bj7a1
        complexed with ni, pg4, po4
      2. 1996610Domain d2bj9b1: 2bj9 B:1-50 [128618]
        Other proteins in same PDB: d2bj9a2, d2bj9b2
        automated match to d2bj7a1
        complexed with ni, pg4, po4

More info for Protein automated matches from a.43.1.0: automated matches

Timeline for Protein automated matches from a.43.1.0: automated matches: