Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2685878Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 2689591Superfamily a.1.2: alpha-helical ferredoxin [46548] (3 families) (S)
    contains two Fe4-S4 clusters
  5. 2689722Family a.1.2.0: automated matches [230426] (1 protein)
    not a true family
  6. 2689723Protein automated matches [230427] (2 species)
    not a true protein

Species:

  1. 2689724Mycolicibacterium smegmatis [TaxId:1445611] [386132] (1 PDB entry)
  2. 2689728Pig roundworm (Ascaris suum) [TaxId:6253] [256142] (8 PDB entries)
    1. Domains for 3vr8:
      1. 2689735Domain d3vr8b2: 3vr8 B:139-281 [250652]
        Other proteins in same PDB: d3vr8b1, d3vr8f1
        automated match to d1zoyb2
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
      2. 2689736Domain d3vr8f2: 3vr8 F:139-281 [250654]
        Other proteins in same PDB: d3vr8b1, d3vr8f1
        automated match to d1zoyb2
        complexed with eph, f3s, fad, fes, hem, mli, rqx, sf4
    2. Domains for 3vr9:
      1. 2689743Domain d3vr9b2: 3vr9 B:139-281 [250656]
        Other proteins in same PDB: d3vr9b1, d3vr9f1
        automated match to d1zoyb2
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
      2. 2689744Domain d3vr9f2: 3vr9 F:139-281 [250658]
        Other proteins in same PDB: d3vr9b1, d3vr9f1
        automated match to d1zoyb2
        complexed with eph, f3s, fad, fes, ftn, hem, mli, sf4
    3. Domains for 3vrb:
      1. 2689739Domain d3vrbb2: 3vrb B:139-281 [250660]
        Other proteins in same PDB: d3vrbb1, d3vrbf1
        automated match to d1zoyb2
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
      2. 2689740Domain d3vrbf2: 3vrb F:139-281 [250662]
        Other proteins in same PDB: d3vrbb1, d3vrbf1
        automated match to d1zoyb2
        complexed with eph, f3s, fad, fes, ftn, fum, hem, sf4
    4. Domains for 4ysx:
      1. 2689729Domain d4ysxb2: 4ysx B:139-282 [275742]
        Other proteins in same PDB: d4ysxb1, d4ysxf1
        automated match to d3vrbb2
        complexed with e23, eph, f3s, fad, fes, hem, mli, sf4
      2. 2689730Domain d4ysxf2: 4ysx F:139-282 [275744]
        Other proteins in same PDB: d4ysxb1, d4ysxf1
        automated match to d3vrbb2
        complexed with e23, eph, f3s, fad, fes, hem, mli, sf4
    5. Domains for 4ysy:
      1. 2689741Domain d4ysyb2: 4ysy B:139-282 [275738]
        Other proteins in same PDB: d4ysyb1, d4ysyf1
        automated match to d3vrbb2
        complexed with e24, eph, f3s, fad, fes, hem, mli, sf4
      2. 2689742Domain d4ysyf2: 4ysy F:139-282 [275740]
        Other proteins in same PDB: d4ysyb1, d4ysyf1
        automated match to d3vrbb2
        complexed with e24, eph, f3s, fad, fes, hem, mli, sf4
    6. Domains for 4ytn:
      1. 2689737Domain d4ytnb2: 4ytn B:139-282 [275748]
        Other proteins in same PDB: d4ytnb1, d4ytnf1
        automated match to d3vrbb2
        complexed with f3s, fad, fd8, fes, hem, mli, sf4
      2. 2689738Domain d4ytnf2: 4ytn F:139-282 [275751]
        Other proteins in same PDB: d4ytnb1, d4ytnf1
        automated match to d3vrbb2
        complexed with f3s, fad, fd8, fes, hem, mli, sf4
    7. Domains for 5c2t:
      1. 2689731Domain d5c2tb2: 5c2t B:139-282 [275581]
        Other proteins in same PDB: d5c2tb1, d5c2tf1
        automated match to d3vrbb2
        complexed with 4yp, eph, f3s, fad, fes, hem, mli, sf4
      2. 2689732Domain d5c2tf2: 5c2t F:139-282 [275583]
        Other proteins in same PDB: d5c2tb1, d5c2tf1
        automated match to d3vrbb2
        complexed with 4yp, eph, f3s, fad, fes, hem, mli, sf4
    8. Domains for 5c3j:
      1. 2689733Domain d5c3jb2: 5c3j B:139-282 [318706]
        Other proteins in same PDB: d5c3jb1, d5c3jf1
        automated match to d3vr8b2
        complexed with eph, f3s, fad, fes, hem, mli, sf4, uq1
      2. 2689734Domain d5c3jf2: 5c3j F:139-282 [318833]
        Other proteins in same PDB: d5c3jb1, d5c3jf1
        automated match to d3vr8b2
        complexed with eph, f3s, fad, fes, hem, mli, sf4, uq1

More info for Protein automated matches from a.1.2.0: automated matches

Timeline for Protein automated matches from a.1.2.0: automated matches: