SCOPe 2.06: Domain d1ygga2: 1ygg A:228-539

Lineage for d1ygga2 (1ygg A:228-539)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.91: PEP carboxykinase-like [53794] (1 superfamily)
   contains a P-loop NTP-binding motif; mixed beta-sheet folds into a barrel-like structure with helices packed on one side

4. Superfamily c.91.1: PEP carboxykinase-like [53795] (3 families)

5. Family c.91.1.1: PEP carboxykinase C-terminal domain [53796] (3 proteins)

6. Protein Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) [68921] (4 species)

7. Species Actinobacillus succinogenes [TaxId:67854] [230421] (2 PDB entries)

8. Domain d1ygga2: 1ygg A:228-539 [230422]
   Other proteins in same PDB: d1ygga1
   automated match to d1j3ba1
   complexed with na, so4

Details for d1ygga2

PDB Entry: 1ygg, 1.85 Å

PDB Description: Crystal structure of phosphoenolpyruvate carboxykinase from Actinobacillus succinogenes

PDB Compounds: (A:) phosphoenolpyruvate carboxykinase

SCOPe Domain Sequences for d1ygga2:

Sequence, based on SEQRES records:

>d1ygga2 c.91.1.1 (A:228-539) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Actinobacillus succinogenes [TaxId: 67854]}
vasmhcsanvgkdgdvaiffglsgtgkttlstdpkrqligddehgwdesgvfnfeggcya
ktinlsqenepdiygairrdallenvvvradgsvdfddgsktentrvsypiyhidnivrp
vskaghatkvifltadafgvlppvskltpeqteyyflsgftaklagtergvteptptfsa
cfgaaflslhpiqyadvlvermkasgaeaylvntgwngtgkrisikdtrgiidaildgsi
ekaemgelpifnlaipkalpgvdpaildprdtyadkaqwqvkaedlanrfvknfvkytan
peaaklvgagpk

Sequence, based on observed residues (ATOM records):

>d1ygga2 c.91.1.1 (A:228-539) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Actinobacillus succinogenes [TaxId: 67854]}
vasmhcsanvgkdgdvaiffglsgtgkttlstdpkrqligddehgwdesgvfnfeggcya
ktinlsqenepdiygairrdallenvvvradgsvdfddgsktentrvsypiyhidnivrp
vskaghatkvifltadafgvlppvskltpeqteyyflsgftakleptptfsacfgaafls
lhpiqyadvlvermkasgaeaylvntgwngtgkrisikdtrgiidaildgsiekaemgel
pifnlaipkalpgvdpaildprdtyadkaqwqvkaedlanrfvknfvkytanpeaaklvg
agpk

Timeline for d1ygga2:

• d1ygga2 first appeared in SCOPe 2.03
  
• d1ygga2 appears in SCOPe 2.05
  
• d1ygga2 appears in SCOPe 2.07
  
• d1ygga2 appears in the current release, SCOPe 2.08