SCOPe 2.08: Domain d4npyl1: 4npy L:1-106A

Lineage for d4npyl1 (4npy L:1-106A)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.0: automated matches [191470] (1 protein)
   not a true family

6. Protein automated matches [190740] (31 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187920] (1793 PDB entries)

8. Domain d4npyl1: 4npy L:1-106A [229737]
   automated match to d1yuha1
   complexed with gol

Details for d4npyl1

PDB Entry: 4npy, 1.8 Å

PDB Description: crystal structure of germline fab pgt121, a putative precursor of the broadly reactive and potent hiv-1 neutralizing antibody

PDB Compounds: (L:) germline PGT121 light chain

SCOPe Domain Sequences for d4npyl1:

Sequence; same for both SEQRES and ATOM records:

>d4npyl1 b.1.1.0 (L:1-106A) automated matches {Human (Homo sapiens) [TaxId: 9606]}
syvltqppsvsvapgqtaritcggnnigsksvhwyqqkpgqapvlvvyddsdrpsgiper
fsgsnsgntatltisrveagdeadyycqvwdsrgptnwvfgggtkltvl

Timeline for d4npyl1:

• d4npyl1 first appeared in SCOPe 2.03
  
• d4npyl1 appears in SCOPe 2.07