Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2172288Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2172289Superfamily d.58.1: 4Fe-4S ferredoxins [54862] (7 families) (S)
  5. 2172628Family d.58.1.0: automated matches [229598] (1 protein)
    not a true family
  6. 2172629Protein automated matches [229599] (3 species)
    not a true protein

Species:

  1. 2172630Clostridium pasteurianum [TaxId:1501] [279205] (7 PDB entries)
    1. Domains for 4xdc:
      1. 2172633Domain d4xdca2: 4xdc A:127-209 [279364]
        Other proteins in same PDB: d4xdca1, d4xdca3, d4xdca4, d4xdcb1, d4xdcb3, d4xdcb4
        automated match to d3c8ya3
        complexed with 402, fes, mg, sf4
      2. 2172634Domain d4xdcb2: 4xdc B:127-209 [279367]
        Other proteins in same PDB: d4xdca1, d4xdca3, d4xdca4, d4xdcb1, d4xdcb3, d4xdcb4
        automated match to d3c8ya3
        complexed with 402, fes, mg, sf4
    2. Domains for 4xdd:
      1. 2172631Domain d4xdda2: 4xdd A:127-209 [279361]
        Other proteins in same PDB: d4xdda1, d4xdda3, d4xdda4, d4xddb1, d4xddb3, d4xddb4
        automated match to d3c8ya3
        complexed with cl, fes, gol, mg, sf4
      2. 2172632Domain d4xddb2: 4xdd B:127-209 [279358]
        Other proteins in same PDB: d4xdda1, d4xdda3, d4xdda4, d4xddb1, d4xddb3, d4xddb4
        automated match to d3c8ya3
        complexed with cl, fes, gol, mg, sf4
    3. Domains for 5byq:
      1. 2172635Domain d5byqa2: 5byq A:127-209 [279211]
        Other proteins in same PDB: d5byqa1, d5byqa3, d5byqa4, d5byqb1, d5byqb3, d5byqb4
        automated match to d3c8ya3
        complexed with 4wv, fes, gol, mg, sf4
      2. 2172636Domain d5byqb2: 5byq B:127-209 [279214]
        Other proteins in same PDB: d5byqa1, d5byqa3, d5byqa4, d5byqb1, d5byqb3, d5byqb4
        automated match to d3c8ya3
        complexed with 4wv, fes, gol, mg, sf4
    4. Domains for 5byr:
      1. 2172637Domain d5byra2: 5byr A:127-209 [279220]
        Other proteins in same PDB: d5byra1, d5byra3, d5byrb1, d5byrb3
        automated match to d3c8ya3
        complexed with 4ww, fes, gol, mg, sf4
      2. 2172638Domain d5byrb2: 5byr B:127-209 [279217]
        Other proteins in same PDB: d5byra1, d5byra3, d5byrb1, d5byrb3
        automated match to d3c8ya3
        complexed with 4ww, fes, gol, mg, sf4
    5. Domains for 5bys:
      1. 2172639Domain d5bysa2: 5bys A:127-209 [279223]
        Other proteins in same PDB: d5bysa1, d5bysa3, d5bysa4, d5bysb1, d5bysb3
        automated match to d3c8ya3
        complexed with 4wx, fes, mg, sf4
      2. 2172640Domain d5bysb2: 5bys B:127-209 [279206]
        Other proteins in same PDB: d5bysa1, d5bysa3, d5bysa4, d5bysb1, d5bysb3
        automated match to d3c8ya3
        complexed with 4wx, fes, mg, sf4
    6. Domains for 5la3:
      1. 2292338Domain d5la3b2: 5la3 B:127-209 [335639]
        Other proteins in same PDB: d5la3a1, d5la3a3, d5la3a4, d5la3b1, d5la3b3, d5la3b4
        automated match to d3c8ya3
        complexed with 402, fes, mg, sf4
      2. 2292343Domain d5la3a2: 5la3 A:127-209 [335644]
        Other proteins in same PDB: d5la3a1, d5la3a3, d5la3a4, d5la3b1, d5la3b3, d5la3b4
        automated match to d3c8ya3
        complexed with 402, fes, mg, sf4
    7. Domains for 5oef:
      1. 2298786Domain d5oefb2: 5oef B:127-209 [342087]
        Other proteins in same PDB: d5oefa1, d5oefa3, d5oefb1, d5oefb3
        automated match to d3c8ya3
        complexed with 9sq, fes, mg, sf4
      2. 2298815Domain d5oefa2: 5oef A:127-209 [342116]
        Other proteins in same PDB: d5oefa1, d5oefa3, d5oefb1, d5oefb3
        automated match to d3c8ya3
        complexed with 9sq, fes, mg, sf4
  2. 2172641Rhodopseudomonas palustris [TaxId:316058] [229600] (2 PDB entries)
    1. Domain for 4id8:
    2. Domain for 4ov1:
  3. 2172644Thermus thermophilus HB8 [TaxId:300852] [255889] (3 PDB entries)
    1. Domains for 3i9v:
      1. 2172647Domain d3i9v32: 3i9v 3:96-246 [246756]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v31, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug34
        complexed with ca, fes, fmn, mn, sf4
      2. 2172648Domain d3i9vc2: 3i9v C:96-246 [246769]
        Other proteins in same PDB: d3i9v11, d3i9v12, d3i9v13, d3i9v2_, d3i9v31, d3i9v33, d3i9v34, d3i9v4_, d3i9v5_, d3i9v6_, d3i9v7_, d3i9v9_, d3i9va1, d3i9va2, d3i9va3, d3i9vb_, d3i9vc1, d3i9vc3, d3i9vc4, d3i9vd_, d3i9ve_, d3i9vf_, d3i9vg_, d3i9vh_
        automated match to d2fug34
        complexed with ca, fes, fmn, mn, sf4
    2. Domains for 3iam:
      1. 2172645Domain d3iam32: 3iam 3:96-246 [246782]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam31, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc1, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug34
        complexed with ca, fes, fmn, mg, nai, sf4
      2. 2172646Domain d3iamc2: 3iam C:96-246 [246795]
        Other proteins in same PDB: d3iam11, d3iam12, d3iam13, d3iam2_, d3iam31, d3iam33, d3iam34, d3iam4_, d3iam5_, d3iam6_, d3iam7_, d3iam9_, d3iama1, d3iama2, d3iama3, d3iamb_, d3iamc1, d3iamc3, d3iamc4, d3iamd_, d3iame_, d3iamf_, d3iamg_, d3iamh_
        automated match to d2fug34
        complexed with ca, fes, fmn, mg, nai, sf4
    3. Domains for 3ias:
      1. 2172649Domain d3ias32: 3ias 3:96-246 [246848]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug34
        complexed with ca, fes, fmn, sf4
      2. 2172650Domain d3iasc2: 3ias C:96-246 [246861]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug34
        complexed with ca, fes, fmn, sf4
      3. 2172651Domain d3iasl2: 3ias L:96-246 [246874]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug34
        complexed with ca, fes, fmn, sf4
      4. 2172652Domain d3iasu2: 3ias U:96-246 [246887]
        Other proteins in same PDB: d3ias11, d3ias12, d3ias13, d3ias2_, d3ias31, d3ias33, d3ias34, d3ias4_, d3ias5_, d3ias6_, d3ias7_, d3ias9_, d3iasa1, d3iasa2, d3iasa3, d3iasb_, d3iasc1, d3iasc3, d3iasc4, d3iasd_, d3iase_, d3iasf_, d3iasg_, d3iash_, d3iasj1, d3iasj2, d3iasj3, d3iask_, d3iasl1, d3iasl3, d3iasl4, d3iasm_, d3iasn_, d3iaso_, d3iasp_, d3iasq_, d3iass1, d3iass2, d3iass3, d3iast_, d3iasu1, d3iasu3, d3iasu4, d3iasv_, d3iasw_, d3iasx_, d3iasy_, d3iasz_
        automated match to d2fug34
        complexed with ca, fes, fmn, sf4

More info for Protein automated matches from d.58.1.0: automated matches

Timeline for Protein automated matches from d.58.1.0: automated matches: