SCOPe 2.05: Domain d4nasd1: 4nas D:9-122

Lineage for d4nasd1 (4nas D:9-122)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
   alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

4. Superfamily d.58.9: RuBisCO, large subunit, small (N-terminal) domain [54966] (2 families)
   C-terminal domain is beta/alpha barrel

5. Family d.58.9.0: automated matches [227234] (1 protein)
   not a true family

6. Protein automated matches [226983] (12 species)
   not a true protein

7. Species Alicyclobacillus acidocaldarius [TaxId:521098] [228997] (1 PDB entry)

8. Domain d4nasd1: 4nas D:9-122 [228999]
   Other proteins in same PDB: d4nasa2, d4nasb2, d4nasc2, d4nasd2
   automated match to d3a12d1
   complexed with ca, cl, fmt, gol

Details for d4nasd1

PDB Entry: 4nas, 1.92 Å

PDB Description: The crystal structure of a rubisco-like protein (MtnW) from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446

PDB Compounds: (D:) Ribulose-bisphosphate carboxylase

SCOPe Domain Sequences for d4nasd1:

Sequence, based on SEQRES records:

>d4nasd1 d.58.9.0 (D:9-122) automated matches {Alicyclobacillus acidocaldarius [TaxId: 521098]}
rdavvatyrlrdrkdklearaegiavgltigtwtdlpaarksevakhcgrvegirvlder
pdgdvvaeidiaypvanlngtfasllvtvfgklsmdgeirlerlqmpdelvrqf

Sequence, based on observed residues (ATOM records):

>d4nasd1 d.58.9.0 (D:9-122) automated matches {Alicyclobacillus acidocaldarius [TaxId: 521098]}
rdavvatyrlrdrkdklearaegiavgltigtwrksvakhcgrvegirvlderpdgdvva
eidiaypvanlngtfasllvtvfgklsmdgeirlerlqmpdelvrqf

Timeline for d4nasd1:

• d4nasd1 first appeared in SCOPe 2.03
  
• d4nasd1 appears in SCOPe 2.04
  
• d4nasd1 appears in SCOPe 2.06
  
• d4nasd1 appears in the current release, SCOPe 2.08