Lineage for d4mj0b_ (4mj0 B:)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2076457Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2076790Family b.121.6.0: automated matches [227135] (1 protein)
    not a true family
  6. 2076791Protein automated matches [226836] (6 species)
    not a true protein
  7. 2076792Species Bk polyomavirus [TaxId:10629] [228808] (2 PDB entries)
  8. 2076794Domain d4mj0b_: 4mj0 B: [228809]
    automated match to d1vpsb_
    complexed with cl, gol

Details for d4mj0b_

PDB Entry: 4mj0 (more details), 1.7 Å

PDB Description: bk polyomavirus vp1 pentamer in complex with gd3 oligosaccharide
PDB Compounds: (B:) VP1 capsid protein

SCOPe Domain Sequences for d4mj0b_:

Sequence, based on SEQRES records: (download)

>d4mj0b_ b.121.6.0 (B:) automated matches {Bk polyomavirus [TaxId: 10629]}
evlevktgvdaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystar
iplpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhff
avggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdp
srnentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglftn
ssgtqqwrglaryfkirlrkrsvkn

Sequence, based on observed residues (ATOM records): (download)

>d4mj0b_ b.121.6.0 (B:) automated matches {Bk polyomavirus [TaxId: 10629]}
evlevktdaitevecflnpemgdpdenlrgfslklsaendfssdsperkmlpcystarip
lpnlnedltcgnllmweavtvqtevigitsmlnlhagsqkvhehgggkpiqgsnfhffav
ggdplemqgvlmnyrtkypdgtitpknptaqsqvmntdhkayldknnaypvecwvpdpsr
nentryfgtftggenvppvlhvtntattvlldeqgvgplckadslyvsaadicglftnss
gtqqwrglaryfkirlrkrsvkn

SCOPe Domain Coordinates for d4mj0b_:

Click to download the PDB-style file with coordinates for d4mj0b_.
(The format of our PDB-style files is described here.)

Timeline for d4mj0b_: