SCOPe 2.08: Domain d4m4db2: 4m4d B:241-481

Lineage for d4m4db2 (4m4d B:241-481)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.83: Aha1/BPI domain-like [55393] (2 superfamilies)
   core: [beta]-alpha-beta(5)-alpha; 2 layers: alpha/beta; antiparallel beta-sheet, meander

4. Superfamily d.83.1: Bactericidal permeability-increasing protein, BPI [55394] (2 families)
   duplication: consists of two clear structural repeats of this fold also containing an extra C-terminal beta-hairpin

5. Family d.83.1.0: automated matches [228706] (1 protein)
   not a true family

6. Protein automated matches [228707] (1 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [228708] (1 PDB entry)

8. Domain d4m4db2: 4m4d B:241-481 [228711]
   automated match to d1ewfa2
   complexed with nag, pc1

Details for d4m4db2

PDB Entry: 4m4d, 2.91 Å

PDB Description: crystal structure of lipopolysaccharide binding protein

PDB Compounds: (B:) Lipopolysaccharide-binding protein

SCOPe Domain Sequences for d4m4db2:

Sequence, based on SEQRES records:

>d4m4db2 d.83.1.0 (B:241-481) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
qvldvmfkgeifnrnhrspvatptptmslpedskqmvyfaisdyafniasrvyhqagyln
fsitddmlphdsgirlntkafrpftpqiykkypdmklellgtvvsapilnvspgnlslap
qmeiegfvilptsarepvfrlgvvtnvfasltfnnskvtgmlhpdkaqvrlieskvgmfn
vnlfqaflnyyllnslypdvnaelaqgfplplprhiqlhdldfqirkdflylganvqymr
v

Sequence, based on observed residues (ATOM records):

>d4m4db2 d.83.1.0 (B:241-481) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
qvldvmfkgeifnhrspvatptptmslpedskqmvyfaisdyaylnfsitddmlphdsgi
rlntkafrpftpqiykkypdmklellgtvvsapilnvspgnlslapqmeiegfvilptsa
repvfrlgvvtnvfasltfnnskvtgmlhpdkaqvrlieskvgmfnvnlfqaflnyylln
slypdvnaelaqgfplplprhiqlhdldfqirkdflylganvqymrv

Timeline for d4m4db2:

• d4m4db2 first appeared in SCOPe 2.03
  
• d4m4db2 appears in SCOPe 2.07