Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2046974Superfamily b.34.6: Cell growth inhibitor/plasmid maintenance toxic component [50118] (4 families) (S)
    contains insert beta-sheet subdomain and C-terminal helix
  5. 2047011Family b.34.6.2: Kid/PemK [82075] (4 protein domains)
    automatically mapped to Pfam PF02452
  6. 2047031Protein automated matches [228538] (6 species)
    not a true protein

Species:

  1. 2047032Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [228921] (1 PDB entry)
  2. 2047035Bacillus subtilis [TaxId:224308] [228539] (1 PDB entry)
  3. 2047040Staphylococcus aureus [TaxId:1280] [256429] (1 PDB entry)
  4. 2047043Staphylococcus aureus [TaxId:158878] [268507] (1 PDB entry)
  5. 2047045Staphylococcus aureus [TaxId:158879] [257115] (4 PDB entries)
    1. Domains for 4mzm:
      1. 2047046Domain d4mzma1: 4mzm A:2-114 [257116]
        Other proteins in same PDB: d4mzma2, d4mzmb2, d4mzmc2, d4mzmd2
        automated match to d4hkea_
      2. 2047047Domain d4mzmb1: 4mzm B:2-113 [257117]
        Other proteins in same PDB: d4mzma2, d4mzmb2, d4mzmc2, d4mzmd2
        automated match to d4hkea_
      3. 2047048Domain d4mzmc1: 4mzm C:2-113 [263079]
        Other proteins in same PDB: d4mzma2, d4mzmb2, d4mzmc2, d4mzmd2
        automated match to d2mf2a_
      4. 2047049Domain d4mzmd1: 4mzm D:2-113 [263080]
        Other proteins in same PDB: d4mzma2, d4mzmb2, d4mzmc2, d4mzmd2
        automated match to d2mf2a_
    2. Domains for 4mzp:
      1. 2047053Domain d4mzpa1: 4mzp A:2-114 [266852]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      2. 2047054Domain d4mzpb1: 4mzp B:2-113 [266853]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      3. 2047055Domain d4mzpc1: 4mzp C:2-113 [266854]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      4. 2047056Domain d4mzpd1: 4mzp D:2-113 [266855]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      5. 2047057Domain d4mzpe1: 4mzp E:2-113 [266856]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      6. 2047058Domain d4mzpf1: 4mzp F:2-114 [266857]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      7. 2047059Domain d4mzpg1: 4mzp G:2-113 [266858]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
      8. 2047060Domain d4mzph1: 4mzp H:2-114 [266859]
        Other proteins in same PDB: d4mzpa2, d4mzpb2, d4mzpc2, d4mzpd2, d4mzpe2, d4mzpf2, d4mzpg2, d4mzph2
        automated match to d2mf2a_
    3. Domains for 4mzt:
      1. 2047051Domain d4mzta1: 4mzt A:2-113 [266860]
        Other proteins in same PDB: d4mzta2, d4mztb2
        automated match to d2mf2a_
      2. 2047052Domain d4mztb1: 4mzt B:2-113 [266861]
        Other proteins in same PDB: d4mzta2, d4mztb2
        automated match to d2mf2a_
    4. Domain for 4of1:
  6. 2269453Escherichia coli [TaxId:83333] [312759] (6 PDB entries)
    1. Domains for 5ck9:
      1. 2269574Domain d5ck9a_: 5ck9 A: [312878]
        automated match to d1ub4a_
        complexed with 1pe
      2. 2273290Domain d5ck9b1: 5ck9 B:2-111 [316591]
        Other proteins in same PDB: d5ck9b2
        automated match to d5ck9a_
        complexed with 1pe
    2. Domains for 5ckb:
      1. 2269464Domain d5ckbb_: 5ckb B: [312770]
        automated match to d1ub4a_
      2. 2269496Domain d5ckba_: 5ckb A: [312802]
        automated match to d1ub4a_
    3. Domains for 5ckd:
      1. 2269455Domain d5ckda_: 5ckd A: [312761]
        automated match to d1ub4a_
        complexed with na
      2. 2273241Domain d5ckdb1: 5ckd B:2-111 [316542]
        Other proteins in same PDB: d5ckdb2
        automated match to d5ck9a_
        complexed with na
    4. Domains for 5cke:
      1. 2273233Domain d5ckeb1: 5cke B:2-111 [316534]
        Other proteins in same PDB: d5ckea2, d5ckeb2
        automated match to d5ck9a_
        complexed with mrd, so4
      2. 2273272Domain d5ckea1: 5cke A:2-111 [316573]
        Other proteins in same PDB: d5ckea2, d5ckeb2
        automated match to d5ck9a_
        complexed with mrd, so4
    5. Domains for 5ckf:
      1. 2269480Domain d5ckfa_: 5ckf A: [312786]
        automated match to d1ub4a_
        complexed with na
      2. 2273227Domain d5ckfb1: 5ckf B:2-111 [316528]
        Other proteins in same PDB: d5ckfb2
        automated match to d5ck9a_
        complexed with na
    6. Domains for 5ckh:
      1. 2269544Domain d5ckha_: 5ckh A: [312848]
        automated match to d1ub4a_
      2. 2273298Domain d5ckhb1: 5ckh B:2-111 [316599]
        Other proteins in same PDB: d5ckhb2
        automated match to d5ck9a_

More info for Protein automated matches from b.34.6.2: Kid/PemK

Timeline for Protein automated matches from b.34.6.2: Kid/PemK: