SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
The nucleotide-binding modes of this and the next two folds/superfamilies are similar

Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)
Family c.2.1.9: Potassium channel NAD-binding domain [63944] (5 proteins)
automatically mapped to Pfam PF02254
Protein automated matches [228498] (1 species)
not a true protein

Species:

Methanothermobacter thermautotrophicus [TaxId:187420] [228499] (6 PDB entries)
1. Domains for 3kxd:
  1. Domain d3kxda1: 3kxd A:116-244 [232735]
    Other proteins in same PDB: d3kxda2, d3kxdb2
    automated match to d1lnqa3
    protein/RNA complex; complexed with cd
  2. Domain d3kxdb1: 3kxd B:116-244 [232737]
    Other proteins in same PDB: d3kxda2, d3kxdb2
    automated match to d1lnqa3
    protein/RNA complex; complexed with cd
2. Domains for 3rbx:
  1. Domain d3rbxa1: 3rbx A:116-244 [233428]
    Other proteins in same PDB: d3rbxa2, d3rbxb2, d3rbxc2, d3rbxd2, d3rbxe2, d3rbxf2
    automated match to d1lnqa3
    complexed with ca; mutant
  2. Domain d3rbxb1: 3rbx B:116-244 [233426]
    Other proteins in same PDB: d3rbxa2, d3rbxb2, d3rbxc2, d3rbxd2, d3rbxe2, d3rbxf2
    automated match to d1lnqa3
    complexed with ca; mutant
  3. Domain d3rbxc1: 3rbx C:116-244 [233430]
    Other proteins in same PDB: d3rbxa2, d3rbxb2, d3rbxc2, d3rbxd2, d3rbxe2, d3rbxf2
    automated match to d1lnqa3
    complexed with ca; mutant
  4. Domain d3rbxd1: 3rbx D:116-244 [233432]
    Other proteins in same PDB: d3rbxa2, d3rbxb2, d3rbxc2, d3rbxd2, d3rbxe2, d3rbxf2
    automated match to d1lnqa3
    complexed with ca; mutant
  5. Domain d3rbxe1: 3rbx E:116-244 [233434]
    Other proteins in same PDB: d3rbxa2, d3rbxb2, d3rbxc2, d3rbxd2, d3rbxe2, d3rbxf2
    automated match to d1lnqa3
    complexed with ca; mutant
  6. Domain d3rbxf1: 3rbx F:116-244 [233433]
    Other proteins in same PDB: d3rbxa2, d3rbxb2, d3rbxc2, d3rbxd2, d3rbxe2, d3rbxf2
    automated match to d1lnqa3
    complexed with ca; mutant
3. Domains for 4l73:
  1. Domain d4l73a1: 4l73 A:115-244 [235284]
    Other proteins in same PDB: d4l73a2, d4l73b2
    automated match to d4l74a1
    complexed with ca, cl, na
  2. Domain d4l73b1: 4l73 B:115-244 [235286]
    Other proteins in same PDB: d4l73a2, d4l73b2
    automated match to d4l74a1
    complexed with ca, cl, na
4. Domains for 4l74:
  1. Domain d4l74a1: 4l74 A:116-244 [228509]
    Other proteins in same PDB: d4l74a2, d4l74b2
    automated match to d1lnqa3
    complexed with ca
  2. Domain d4l74b1: 4l74 B:116-244 [235288]
    Other proteins in same PDB: d4l74a2, d4l74b2
    automated match to d4l74a1
    complexed with ca
5. Domains for 4l75:
  1. Domain d4l75a1: 4l75 A:111-244 [235290]
    Other proteins in same PDB: d4l75a2, d4l75b2, d4l75c2, d4l75d2, d4l75e2, d4l75f2
    automated match to d4l75d1
    complexed with ca; mutant
  2. Domain d4l75b1: 4l75 B:115-244 [235293]
    Other proteins in same PDB: d4l75a2, d4l75b2, d4l75c2, d4l75d2, d4l75e2, d4l75f2
    automated match to d4l75d1
    complexed with ca; mutant
  3. Domain d4l75c1: 4l75 C:116-244 [235303]
    Other proteins in same PDB: d4l75a2, d4l75b2, d4l75c2, d4l75d2, d4l75e2, d4l75f2
    automated match to d4l75d1
    complexed with ca; mutant
  4. Domain d4l75d1: 4l75 D:116-244 [228511]
    Other proteins in same PDB: d4l75a2, d4l75b2, d4l75c2, d4l75d2, d4l75e2, d4l75f2
    automated match to d1lnqa3
    complexed with ca; mutant
  5. Domain d4l75e1: 4l75 E:116-244 [235305]
    Other proteins in same PDB: d4l75a2, d4l75b2, d4l75c2, d4l75d2, d4l75e2, d4l75f2
    automated match to d4l75d1
    complexed with ca; mutant
  6. Domain d4l75f1: 4l75 F:116-244 [235297]
    Other proteins in same PDB: d4l75a2, d4l75b2, d4l75c2, d4l75d2, d4l75e2, d4l75f2
    automated match to d4l75d1
    complexed with ca; mutant
6. Domains for 4l76:
  1. Domain d4l76a1: 4l76 A:113-244 [235301]
    Other proteins in same PDB: d4l76a2, d4l76b2, d4l76c2, d4l76d2, d4l76e2, d4l76f2
    automated match to d4l76e1
    complexed with ca, na; mutant
  2. Domain d4l76b1: 4l76 B:115-244 [235299]
    Other proteins in same PDB: d4l76a2, d4l76b2, d4l76c2, d4l76d2, d4l76e2, d4l76f2
    automated match to d4l76e1
    complexed with ca, na; mutant
  3. Domain d4l76c1: 4l76 C:116-244 [235307]
    Other proteins in same PDB: d4l76a2, d4l76b2, d4l76c2, d4l76d2, d4l76e2, d4l76f2
    automated match to d4l76d1
    complexed with ca, na; mutant
  4. Domain d4l76d1: 4l76 D:116-244 [228500]
    Other proteins in same PDB: d4l76a2, d4l76b2, d4l76c2, d4l76d2, d4l76e2, d4l76f2
    automated match to d1lnqa3
    complexed with ca, na; mutant
  5. Domain d4l76e1: 4l76 E:115-244 [228501]
    Other proteins in same PDB: d4l76a2, d4l76b2, d4l76c2, d4l76d2, d4l76e2, d4l76f2
    automated match to d1lnqa3
    complexed with ca, na; mutant
  6. Domain d4l76f1: 4l76 F:116-244 [228503]
    Other proteins in same PDB: d4l76a2, d4l76b2, d4l76c2, d4l76d2, d4l76e2, d4l76f2
    automated match to d1lnqa3
    complexed with ca, na; mutant

More info for Protein automated matches from c.2.1.9: Potassium channel NAD-binding domain

Timeline for Protein automated matches from c.2.1.9: Potassium channel NAD-binding domain:

Protein automated matches from c.2.1.9: Potassium channel NAD-binding domain is new in SCOPe 2.03-stable
Protein automated matches from c.2.1.9: Potassium channel NAD-binding domain appears in SCOPe 2.04
Protein automated matches from c.2.1.9: Potassium channel NAD-binding domain appears in the current release, SCOPe 2.08